Strain Fitness in Xanthobacter sp. DMC5 around GFF883

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF881 and GFF882 are separated by 212 nucleotidesGFF882 and GFF883 are separated by 188 nucleotidesGFF883 and GFF884 are separated by 557 nucleotides GFF881 - hypothetical protein, at 954,214 to 954,360 GFF881 GFF882 - hypothetical protein, at 954,573 to 954,857 GFF882 GFF883 - hypothetical protein, at 955,046 to 955,900 GFF883 GFF884 - hypothetical protein, at 956,458 to 957,294 GFF884 Position (kb) 955 956Strain fitness (log2 ratio) -2 -1 0 1at 954.081 kb on + strandat 954.287 kb on + strand, within GFF881at 954.288 kb on - strand, within GFF881at 954.297 kb on - strand, within GFF881at 954.341 kb on + strand, within GFF881at 954.341 kb on + strand, within GFF881at 954.445 kb on - strandat 954.445 kb on - strandat 954.445 kb on - strandat 954.512 kb on + strandat 954.585 kb on - strandat 954.660 kb on + strand, within GFF882at 954.660 kb on + strand, within GFF882at 954.660 kb on + strand, within GFF882at 954.661 kb on - strand, within GFF882at 954.661 kb on - strand, within GFF882at 954.661 kb on - strand, within GFF882at 954.856 kb on - strandat 955.047 kb on + strandat 955.047 kb on + strandat 955.048 kb on - strandat 955.140 kb on + strand, within GFF883at 955.152 kb on + strand, within GFF883at 955.152 kb on + strand, within GFF883at 955.170 kb on + strand, within GFF883at 955.171 kb on - strand, within GFF883at 955.200 kb on + strand, within GFF883at 955.201 kb on - strand, within GFF883at 955.276 kb on - strand, within GFF883at 955.278 kb on + strand, within GFF883at 955.279 kb on - strand, within GFF883at 955.357 kb on + strand, within GFF883at 955.357 kb on + strand, within GFF883at 955.358 kb on - strand, within GFF883at 955.358 kb on - strand, within GFF883at 955.358 kb on - strand, within GFF883at 955.358 kb on - strand, within GFF883at 955.425 kb on + strand, within GFF883at 955.425 kb on + strand, within GFF883at 955.426 kb on - strand, within GFF883at 955.491 kb on + strand, within GFF883at 955.507 kb on - strand, within GFF883at 955.566 kb on + strand, within GFF883at 955.579 kb on + strand, within GFF883at 955.581 kb on + strand, within GFF883at 955.581 kb on + strand, within GFF883at 955.582 kb on - strand, within GFF883at 955.656 kb on - strand, within GFF883at 955.731 kb on + strand, within GFF883at 955.752 kb on + strand, within GFF883at 955.752 kb on + strand, within GFF883at 955.755 kb on - strand, within GFF883at 955.755 kb on - strand, within GFF883at 955.975 kb on + strandat 955.978 kb on + strandat 955.979 kb on - strandat 955.979 kb on - strandat 955.979 kb on - strandat 955.979 kb on - strandat 956.021 kb on - strandat 956.109 kb on + strandat 956.109 kb on + strandat 956.132 kb on - strandat 956.132 kb on - strandat 956.227 kb on + strandat 956.251 kb on - strandat 956.251 kb on - strandat 956.366 kb on + strandat 956.366 kb on + strandat 956.367 kb on - strandat 956.367 kb on - strandat 956.367 kb on - strandat 956.473 kb on + strandat 956.482 kb on + strandat 956.482 kb on + strandat 956.536 kb on + strandat 956.632 kb on + strand, within GFF884at 956.632 kb on + strand, within GFF884at 956.632 kb on + strand, within GFF884at 956.632 kb on + strand, within GFF884at 956.633 kb on - strand, within GFF884at 956.638 kb on - strand, within GFF884at 956.656 kb on + strand, within GFF884at 956.665 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.692 kb on + strand, within GFF884at 956.693 kb on - strand, within GFF884at 956.693 kb on - strand, within GFF884at 956.737 kb on + strand, within GFF884at 956.737 kb on + strand, within GFF884at 956.737 kb on + strand, within GFF884at 956.737 kb on + strand, within GFF884at 956.886 kb on + strand, within GFF884at 956.886 kb on + strand, within GFF884at 956.887 kb on - strand, within GFF884

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
954,081 + +0.8
954,287 + GFF881 0.50 -1.7
954,288 - GFF881 0.50 +0.5
954,297 - GFF881 0.56 -0.6
954,341 + GFF881 0.86 -0.7
954,341 + GFF881 0.86 +0.1
954,445 - -0.1
954,445 - -0.3
954,445 - +0.2
954,512 + +0.6
954,585 - -0.4
954,660 + GFF882 0.31 +0.5
954,660 + GFF882 0.31 -0.2
954,660 + GFF882 0.31 +0.6
954,661 - GFF882 0.31 -0.6
954,661 - GFF882 0.31 -0.0
954,661 - GFF882 0.31 +0.3
954,856 - -0.1
955,047 + -1.2
955,047 + +0.7
955,048 - +0.5
955,140 + GFF883 0.11 -1.9
955,152 + GFF883 0.12 -1.5
955,152 + GFF883 0.12 +0.0
955,170 + GFF883 0.15 -2.1
955,171 - GFF883 0.15 +1.5
955,200 + GFF883 0.18 -0.3
955,201 - GFF883 0.18 -0.1
955,276 - GFF883 0.27 -0.9
955,278 + GFF883 0.27 -1.0
955,279 - GFF883 0.27 +0.4
955,357 + GFF883 0.36 -0.3
955,357 + GFF883 0.36 +0.0
955,358 - GFF883 0.36 -1.9
955,358 - GFF883 0.36 +0.4
955,358 - GFF883 0.36 -0.5
955,358 - GFF883 0.36 +0.8
955,425 + GFF883 0.44 +0.6
955,425 + GFF883 0.44 -1.1
955,426 - GFF883 0.44 +0.2
955,491 + GFF883 0.52 -0.1
955,507 - GFF883 0.54 +1.2
955,566 + GFF883 0.61 +0.0
955,579 + GFF883 0.62 +0.5
955,581 + GFF883 0.63 -0.2
955,581 + GFF883 0.63 -2.0
955,582 - GFF883 0.63 +1.5
955,656 - GFF883 0.71 +0.2
955,731 + GFF883 0.80 +0.5
955,752 + GFF883 0.83 +0.2
955,752 + GFF883 0.83 -0.2
955,755 - GFF883 0.83 -0.0
955,755 - GFF883 0.83 +0.2
955,975 + -0.3
955,978 + -1.3
955,979 - +0.5
955,979 - -1.1
955,979 - -1.1
955,979 - +0.6
956,021 - -0.8
956,109 + +0.5
956,109 + -0.3
956,132 - -0.1
956,132 - -1.1
956,227 + -0.2
956,251 - -0.0
956,251 - +0.2
956,366 + -0.4
956,366 + -0.4
956,367 - -0.5
956,367 - -0.1
956,367 - +0.6
956,473 + -0.3
956,482 + +0.3
956,482 + +0.8
956,536 + -0.0
956,632 + GFF884 0.21 -0.3
956,632 + GFF884 0.21 -0.2
956,632 + GFF884 0.21 -0.1
956,632 + GFF884 0.21 -0.5
956,633 - GFF884 0.21 +1.2
956,638 - GFF884 0.22 -0.2
956,656 + GFF884 0.24 +0.6
956,665 + GFF884 0.25 -0.5
956,692 + GFF884 0.28 -2.4
956,692 + GFF884 0.28 -0.3
956,692 + GFF884 0.28 +0.0
956,692 + GFF884 0.28 -0.8
956,692 + GFF884 0.28 +0.9
956,693 - GFF884 0.28 +0.2
956,693 - GFF884 0.28 +0.3
956,737 + GFF884 0.33 +0.2
956,737 + GFF884 0.33 -0.7
956,737 + GFF884 0.33 +0.1
956,737 + GFF884 0.33 -0.1
956,886 + GFF884 0.51 -0.4
956,886 + GFF884 0.51 -0.0
956,887 - GFF884 0.51 -2.2

Or see this region's nucleotide sequence