Strain Fitness in Xanthobacter sp. DMC5 around GFF855

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF854 and GFF855 are separated by 36 nucleotidesGFF855 and GFF856 are separated by 145 nucleotidesGFF856 and GFF857 are separated by 80 nucleotides GFF854 - Arginine--tRNA ligase, at 921,601 to 923,361 GFF854 GFF855 - Deoxyguanosinetriphosphate triphosphohydrolase-like protein, at 923,398 to 924,603 GFF855 GFF856 - Iron-sulfur cluster insertion protein ErpA, at 924,749 to 925,126 GFF856 GFF857 - hypothetical protein, at 925,207 to 926,373 GFF857 Position (kb) 923 924 925Strain fitness (log2 ratio) -1 0 1at 923.474 kb on + strandat 923.475 kb on - strandat 923.567 kb on + strand, within GFF855at 923.633 kb on + strand, within GFF855at 923.633 kb on + strand, within GFF855at 923.803 kb on + strand, within GFF855at 923.804 kb on - strand, within GFF855at 923.960 kb on + strand, within GFF855at 923.960 kb on + strand, within GFF855at 923.961 kb on - strand, within GFF855at 924.635 kb on + strandat 924.636 kb on - strandat 924.710 kb on + strandat 924.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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923,474 + +0.2
923,475 - +0.9
923,567 + GFF855 0.14 +0.2
923,633 + GFF855 0.19 +1.0
923,633 + GFF855 0.19 +0.9
923,803 + GFF855 0.34 +0.7
923,804 - GFF855 0.34 -0.7
923,960 + GFF855 0.47 +0.3
923,960 + GFF855 0.47 +0.5
923,961 - GFF855 0.47 -0.4
924,635 + +0.8
924,636 - -0.1
924,710 + -0.3
924,711 - +0.6

Or see this region's nucleotide sequence