Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF843 and GFF844 are separated by 23 nucleotides GFF844 and GFF845 are separated by 108 nucleotides
GFF843 - Trk system potassium uptake protein TrkH, at 906,274 to 907,686
GFF843
GFF844 - Trk system potassium uptake protein TrkA, at 907,710 to 909,086
GFF844
GFF845 - DNA-binding transcriptional regulator NtrC, at 909,195 to 910,562
GFF845
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -2
-1
0
1
2 at 906.743 kb on + strand, within GFF843 at 906.743 kb on + strand, within GFF843 at 906.744 kb on - strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.279 kb on + strand, within GFF843 at 907.280 kb on - strand, within GFF843 at 908.071 kb on + strand, within GFF844 at 908.347 kb on + strand, within GFF844 at 908.348 kb on - strand, within GFF844 at 908.348 kb on - strand, within GFF844 at 908.350 kb on + strand, within GFF844 at 908.455 kb on + strand, within GFF844 at 908.456 kb on - strand, within GFF844 at 908.776 kb on + strand, within GFF844 at 909.215 kb on + strand at 909.215 kb on + strand at 909.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 906,743 + GFF843 0.33 +0.5 906,743 + GFF843 0.33 +0.3 906,744 - GFF843 0.33 -0.1 907,097 + GFF843 0.58 -0.7 907,097 + GFF843 0.58 -0.3 907,097 + GFF843 0.58 -2.3 907,097 + GFF843 0.58 +0.8 907,097 + GFF843 0.58 -0.3 907,097 + GFF843 0.58 +0.9 907,098 - GFF843 0.58 +0.5 907,098 - GFF843 0.58 +0.4 907,098 - GFF843 0.58 -1.3 907,098 - GFF843 0.58 +1.8 907,098 - GFF843 0.58 +0.2 907,279 + GFF843 0.71 -0.2 907,280 - GFF843 0.71 -0.2 908,071 + GFF844 0.26 -0.2 908,347 + GFF844 0.46 -0.8 908,348 - GFF844 0.46 +0.8 908,348 - GFF844 0.46 +0.0 908,350 + GFF844 0.46 -1.8 908,455 + GFF844 0.54 +0.6 908,456 - GFF844 0.54 +0.8 908,776 + GFF844 0.77 -0.6 909,215 + +0.1 909,215 + +0.9 909,216 - -0.4
Or see this region's nucleotide sequence