Strain Fitness in Xanthobacter sp. DMC5 around GFF802

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF800 and GFF801 overlap by 4 nucleotidesGFF801 and GFF802 overlap by 4 nucleotidesGFF802 and GFF803 are separated by 1 nucleotides GFF800 - Oligopeptide transport ATP-binding protein OppD, at 853,641 to 854,663 GFF800 GFF801 - Glutathione transport system permease protein GsiD, at 854,660 to 855,577 GFF801 GFF802 - Glutathione transport system permease protein GsiC, at 855,574 to 856,575 GFF802 GFF803 - Periplasmic dipeptide transport protein, at 856,577 to 858,190 GFF803 Position (kb) 855 856 857Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 854.766 kb on + strand, within GFF801at 854.766 kb on + strand, within GFF801at 854.766 kb on + strand, within GFF801at 854.767 kb on - strand, within GFF801at 854.767 kb on - strand, within GFF801at 854.930 kb on + strand, within GFF801at 854.930 kb on + strand, within GFF801at 854.930 kb on + strand, within GFF801at 854.931 kb on - strand, within GFF801at 854.931 kb on - strand, within GFF801at 854.931 kb on - strand, within GFF801at 855.091 kb on + strand, within GFF801at 855.092 kb on - strand, within GFF801at 855.190 kb on - strand, within GFF801at 855.608 kb on + strandat 855.746 kb on + strand, within GFF802at 855.932 kb on + strand, within GFF802at 855.933 kb on - strand, within GFF802at 855.944 kb on + strand, within GFF802at 855.945 kb on - strand, within GFF802at 855.973 kb on + strand, within GFF802at 855.973 kb on + strand, within GFF802at 855.974 kb on - strand, within GFF802at 856.015 kb on - strand, within GFF802at 856.264 kb on + strand, within GFF802at 856.264 kb on + strand, within GFF802at 856.264 kb on + strand, within GFF802at 856.264 kb on + strand, within GFF802at 856.265 kb on - strand, within GFF802at 856.265 kb on - strand, within GFF802at 856.265 kb on - strand, within GFF802at 856.335 kb on - strand, within GFF802at 856.335 kb on - strand, within GFF802at 856.397 kb on + strand, within GFF802at 856.397 kb on + strand, within GFF802at 856.397 kb on + strand, within GFF802at 856.398 kb on - strand, within GFF802at 856.532 kb on + strandat 856.533 kb on - strandat 856.665 kb on + strandat 856.665 kb on + strandat 856.665 kb on + strandat 856.666 kb on - strandat 856.899 kb on + strand, within GFF803at 856.900 kb on - strand, within GFF803at 856.950 kb on + strand, within GFF803at 856.950 kb on + strand, within GFF803at 856.951 kb on - strand, within GFF803at 856.951 kb on - strand, within GFF803at 856.951 kb on - strand, within GFF803at 856.965 kb on + strand, within GFF803at 856.966 kb on - strand, within GFF803at 857.016 kb on + strand, within GFF803at 857.035 kb on - strand, within GFF803at 857.079 kb on - strand, within GFF803at 857.143 kb on - strand, within GFF803at 857.143 kb on - strand, within GFF803at 857.148 kb on + strand, within GFF803at 857.149 kb on - strand, within GFF803at 857.149 kb on - strand, within GFF803at 857.149 kb on - strand, within GFF803at 857.160 kb on + strand, within GFF803at 857.184 kb on + strand, within GFF803at 857.223 kb on + strand, within GFF803at 857.223 kb on + strand, within GFF803at 857.224 kb on - strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.328 kb on + strand, within GFF803at 857.329 kb on - strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.430 kb on + strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.431 kb on - strand, within GFF803at 857.508 kb on + strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803at 857.530 kb on - strand, within GFF803

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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854,766 + GFF801 0.12 +0.7
854,766 + GFF801 0.12 +0.3
854,766 + GFF801 0.12 -0.5
854,767 - GFF801 0.12 -0.6
854,767 - GFF801 0.12 +0.3
854,930 + GFF801 0.29 -0.4
854,930 + GFF801 0.29 -0.7
854,930 + GFF801 0.29 +0.1
854,931 - GFF801 0.30 -1.2
854,931 - GFF801 0.30 +1.6
854,931 - GFF801 0.30 -0.2
855,091 + GFF801 0.47 -0.7
855,092 - GFF801 0.47 +0.4
855,190 - GFF801 0.58 -0.3
855,608 + +0.1
855,746 + GFF802 0.17 -1.1
855,932 + GFF802 0.36 +0.6
855,933 - GFF802 0.36 -1.4
855,944 + GFF802 0.37 +0.9
855,945 - GFF802 0.37 -0.6
855,973 + GFF802 0.40 -0.1
855,973 + GFF802 0.40 -0.2
855,974 - GFF802 0.40 +0.2
856,015 - GFF802 0.44 +0.1
856,264 + GFF802 0.69 +0.3
856,264 + GFF802 0.69 +0.6
856,264 + GFF802 0.69 -1.1
856,264 + GFF802 0.69 +0.2
856,265 - GFF802 0.69 -0.4
856,265 - GFF802 0.69 +0.2
856,265 - GFF802 0.69 -0.4
856,335 - GFF802 0.76 +0.8
856,335 - GFF802 0.76 +2.1
856,397 + GFF802 0.82 -0.5
856,397 + GFF802 0.82 -0.2
856,397 + GFF802 0.82 -0.7
856,398 - GFF802 0.82 +1.1
856,532 + -0.4
856,533 - -0.6
856,665 + +1.1
856,665 + +0.1
856,665 + +0.1
856,666 - -1.1
856,899 + GFF803 0.20 +1.3
856,900 - GFF803 0.20 -0.8
856,950 + GFF803 0.23 +1.4
856,950 + GFF803 0.23 +0.6
856,951 - GFF803 0.23 +0.1
856,951 - GFF803 0.23 +0.7
856,951 - GFF803 0.23 -0.1
856,965 + GFF803 0.24 +0.3
856,966 - GFF803 0.24 +0.3
857,016 + GFF803 0.27 +0.6
857,035 - GFF803 0.28 +0.3
857,079 - GFF803 0.31 +0.1
857,143 - GFF803 0.35 +0.2
857,143 - GFF803 0.35 -1.2
857,148 + GFF803 0.35 +0.0
857,149 - GFF803 0.35 +1.2
857,149 - GFF803 0.35 +0.2
857,149 - GFF803 0.35 -0.4
857,160 + GFF803 0.36 +0.6
857,184 + GFF803 0.38 -0.3
857,223 + GFF803 0.40 -3.4
857,223 + GFF803 0.40 +1.1
857,224 - GFF803 0.40 +0.0
857,328 + GFF803 0.47 +0.1
857,328 + GFF803 0.47 -0.6
857,328 + GFF803 0.47 -0.1
857,328 + GFF803 0.47 +0.3
857,328 + GFF803 0.47 +0.3
857,329 - GFF803 0.47 -0.4
857,430 + GFF803 0.53 +0.2
857,430 + GFF803 0.53 -0.0
857,430 + GFF803 0.53 +0.7
857,430 + GFF803 0.53 +0.7
857,430 + GFF803 0.53 -0.2
857,430 + GFF803 0.53 +0.0
857,431 - GFF803 0.53 +0.5
857,431 - GFF803 0.53 -0.0
857,431 - GFF803 0.53 +0.6
857,431 - GFF803 0.53 +0.0
857,508 + GFF803 0.58 +0.4
857,530 - GFF803 0.59 -0.6
857,530 - GFF803 0.59 -0.1
857,530 - GFF803 0.59 +1.2
857,530 - GFF803 0.59 -0.6

Or see this region's nucleotide sequence