Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF789 and GFF790 overlap by 4 nucleotides GFF790 and GFF791 are separated by 125 nucleotides GFF791 and GFF792 are separated by 228 nucleotides GFF792 and GFF793 are separated by 159 nucleotides
GFF789 - hypothetical protein, at 841,793 to 842,872
GFF789
GFF790 - hypothetical protein, at 842,869 to 843,435
GFF790
GFF791 - HTH-type transcriptional regulator CymR, at 843,561 to 844,007
GFF791
GFF792 - hypothetical protein, at 844,236 to 844,493
GFF792
GFF793 - Oligopeptide-binding protein AppA, at 844,653 to 846,260
GFF793
Position (kb) 843
844
845 Strain fitness (log2 ratio) -2
-1
0
1 at 842.600 kb on - strand, within GFF789 at 842.616 kb on + strand, within GFF789 at 842.616 kb on + strand, within GFF789 at 842.617 kb on - strand, within GFF789 at 842.625 kb on + strand, within GFF789 at 842.626 kb on - strand, within GFF789 at 842.626 kb on - strand, within GFF789 at 842.626 kb on - strand, within GFF789 at 842.825 kb on - strand at 843.296 kb on + strand, within GFF790 at 843.296 kb on + strand, within GFF790 at 843.296 kb on + strand, within GFF790 at 843.297 kb on - strand, within GFF790 at 843.297 kb on - strand, within GFF790 at 843.297 kb on - strand, within GFF790 at 843.487 kb on - strand at 843.508 kb on + strand at 843.509 kb on - strand at 843.565 kb on - strand at 843.568 kb on + strand at 843.569 kb on - strand at 843.569 kb on - strand at 843.655 kb on + strand, within GFF791 at 843.655 kb on + strand, within GFF791 at 843.656 kb on - strand, within GFF791 at 843.656 kb on - strand, within GFF791 at 843.719 kb on - strand, within GFF791 at 843.986 kb on - strand at 843.986 kb on - strand at 844.655 kb on - strand at 844.655 kb on - strand at 844.670 kb on + strand at 844.671 kb on - strand at 844.676 kb on + strand at 844.676 kb on + strand at 844.676 kb on + strand at 844.677 kb on - strand at 844.732 kb on + strand at 844.732 kb on + strand at 844.732 kb on + strand at 844.732 kb on + strand at 844.985 kb on + strand, within GFF793 at 844.986 kb on - strand, within GFF793 at 845.002 kb on + strand, within GFF793 at 845.003 kb on - strand, within GFF793 at 845.003 kb on - strand, within GFF793
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 842,600 - GFF789 0.75 -1.8 842,616 + GFF789 0.76 +0.1 842,616 + GFF789 0.76 +1.1 842,617 - GFF789 0.76 +0.7 842,625 + GFF789 0.77 -0.0 842,626 - GFF789 0.77 -0.9 842,626 - GFF789 0.77 -0.9 842,626 - GFF789 0.77 +0.4 842,825 - +0.0 843,296 + GFF790 0.75 +0.6 843,296 + GFF790 0.75 -1.3 843,296 + GFF790 0.75 +0.1 843,297 - GFF790 0.75 +0.7 843,297 - GFF790 0.75 +0.1 843,297 - GFF790 0.75 +1.4 843,487 - +0.6 843,508 + -0.5 843,509 - -0.3 843,565 - +0.1 843,568 + +0.6 843,569 - -0.5 843,569 - -0.6 843,655 + GFF791 0.21 -0.1 843,655 + GFF791 0.21 +0.1 843,656 - GFF791 0.21 -1.2 843,656 - GFF791 0.21 -2.0 843,719 - GFF791 0.35 +1.2 843,986 - -0.1 843,986 - -1.0 844,655 - -0.9 844,655 - +0.1 844,670 + +0.8 844,671 - -0.8 844,676 + -2.5 844,676 + +0.5 844,676 + +0.9 844,677 - +0.8 844,732 + +1.6 844,732 + +1.3 844,732 + -1.6 844,732 + +0.4 844,985 + GFF793 0.21 -0.5 844,986 - GFF793 0.21 +0.5 845,002 + GFF793 0.22 -0.8 845,003 - GFF793 0.22 +1.2 845,003 - GFF793 0.22 -0.2
Or see this region's nucleotide sequence