Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF741 and GFF742 are separated by 323 nucleotides GFF742 and GFF743 are separated by 77 nucleotides GFF743 and GFF744 are separated by 167 nucleotides
GFF741 - putative cyclic di-GMP phosphodiesterase PdeB, at 788,546 to 790,021
GFF741
GFF742 - hypothetical protein, at 790,345 to 790,953
GFF742
GFF743 - hypothetical protein, at 791,031 to 791,372
GFF743
GFF744 - Acyl-CoA dehydrogenase, at 791,540 to 792,712
GFF744
Position (kb) 790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.520 kb on - strand, within GFF741 at 789.787 kb on - strand, within GFF741 at 789.841 kb on + strand, within GFF741 at 789.841 kb on + strand, within GFF741 at 789.841 kb on + strand, within GFF741 at 789.841 kb on + strand, within GFF741 at 789.909 kb on + strand at 789.945 kb on + strand at 789.946 kb on - strand at 789.996 kb on + strand at 789.996 kb on + strand at 789.996 kb on + strand at 789.997 kb on - strand at 789.997 kb on - strand at 789.997 kb on - strand at 790.156 kb on - strand at 790.164 kb on + strand at 790.341 kb on + strand at 790.341 kb on + strand at 790.341 kb on + strand at 790.342 kb on - strand at 790.404 kb on + strand at 790.525 kb on + strand, within GFF742 at 790.525 kb on + strand, within GFF742 at 790.525 kb on + strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.628 kb on + strand, within GFF742 at 790.628 kb on + strand, within GFF742 at 790.628 kb on + strand, within GFF742 at 790.629 kb on - strand, within GFF742 at 790.629 kb on - strand, within GFF742 at 790.681 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.888 kb on + strand, within GFF742 at 790.889 kb on - strand, within GFF742 at 790.889 kb on - strand, within GFF742 at 791.480 kb on + strand at 791.538 kb on + strand at 791.539 kb on - strand at 791.613 kb on + strand at 791.614 kb on - strand at 791.791 kb on - strand, within GFF744 at 791.796 kb on + strand, within GFF744 at 791.796 kb on + strand, within GFF744 at 791.796 kb on + strand, within GFF744 at 791.796 kb on + strand, within GFF744 at 791.796 kb on + strand, within GFF744 at 791.797 kb on - strand, within GFF744 at 791.797 kb on - strand, within GFF744 at 791.797 kb on - strand, within GFF744 at 791.823 kb on + strand, within GFF744 at 791.823 kb on + strand, within GFF744 at 791.823 kb on + strand, within GFF744 at 791.823 kb on + strand, within GFF744 at 791.823 kb on + strand, within GFF744 at 791.824 kb on - strand, within GFF744 at 791.898 kb on + strand, within GFF744 at 791.898 kb on + strand, within GFF744 at 791.899 kb on - strand, within GFF744 at 791.899 kb on - strand, within GFF744
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 789,519 + GFF741 0.66 -0.2 789,519 + GFF741 0.66 -0.8 789,519 + GFF741 0.66 +0.2 789,519 + GFF741 0.66 -0.2 789,519 + GFF741 0.66 +0.3 789,519 + GFF741 0.66 -0.9 789,520 - GFF741 0.66 -0.3 789,787 - GFF741 0.84 -1.5 789,841 + GFF741 0.88 +0.5 789,841 + GFF741 0.88 -0.1 789,841 + GFF741 0.88 -1.2 789,841 + GFF741 0.88 +0.7 789,909 + +0.3 789,945 + -0.9 789,946 - +0.1 789,996 + +0.2 789,996 + +0.9 789,996 + +1.8 789,997 - -0.3 789,997 - -1.5 789,997 - +0.5 790,156 - +0.6 790,164 + +1.1 790,341 + +1.6 790,341 + -0.1 790,341 + -0.1 790,342 - -1.2 790,404 + -0.1 790,525 + GFF742 0.30 -0.6 790,525 + GFF742 0.30 +0.1 790,525 + GFF742 0.30 +0.9 790,526 - GFF742 0.30 -0.1 790,526 - GFF742 0.30 +1.2 790,526 - GFF742 0.30 -0.9 790,526 - GFF742 0.30 -0.0 790,526 - GFF742 0.30 -0.4 790,628 + GFF742 0.46 +0.3 790,628 + GFF742 0.46 +0.5 790,628 + GFF742 0.46 -1.0 790,629 - GFF742 0.47 +0.6 790,629 - GFF742 0.47 +0.5 790,681 + GFF742 0.55 -0.1 790,882 + GFF742 0.88 -0.2 790,882 + GFF742 0.88 +0.5 790,882 + GFF742 0.88 -1.4 790,882 + GFF742 0.88 -1.1 790,882 + GFF742 0.88 +0.5 790,882 + GFF742 0.88 -0.1 790,883 - GFF742 0.88 -0.0 790,883 - GFF742 0.88 -0.2 790,883 - GFF742 0.88 +0.7 790,883 - GFF742 0.88 -0.3 790,883 - GFF742 0.88 +1.9 790,883 - GFF742 0.88 -1.7 790,883 - GFF742 0.88 +0.4 790,883 - GFF742 0.88 +0.2 790,888 + GFF742 0.89 -1.1 790,889 - GFF742 0.89 +1.2 790,889 - GFF742 0.89 -0.1 791,480 + -2.8 791,538 + -0.4 791,539 - -0.2 791,613 + +0.5 791,614 - +0.4 791,791 - GFF744 0.21 +1.3 791,796 + GFF744 0.22 +0.7 791,796 + GFF744 0.22 -1.7 791,796 + GFF744 0.22 -0.7 791,796 + GFF744 0.22 +1.3 791,796 + GFF744 0.22 +0.6 791,797 - GFF744 0.22 +0.1 791,797 - GFF744 0.22 +1.5 791,797 - GFF744 0.22 +0.5 791,823 + GFF744 0.24 -1.1 791,823 + GFF744 0.24 +1.5 791,823 + GFF744 0.24 +0.3 791,823 + GFF744 0.24 -0.8 791,823 + GFF744 0.24 -0.1 791,824 - GFF744 0.24 -1.2 791,898 + GFF744 0.31 -0.1 791,898 + GFF744 0.31 +0.3 791,899 - GFF744 0.31 +0.2 791,899 - GFF744 0.31 -0.5
Or see this region's nucleotide sequence