Strain Fitness in Xanthobacter sp. DMC5 around GFF634

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF633 and GFF634 are separated by 86 nucleotidesGFF634 and GFF635 are separated by 168 nucleotidesGFF635 and GFF636 are separated by 41 nucleotides GFF633 - hypothetical protein, at 675,008 to 676,246 GFF633 GFF634 - Thermostable carboxypeptidase 1, at 676,333 to 677,823 GFF634 GFF635 - Heme oxygenase (staphylobilin-producing), at 677,992 to 678,327 GFF635 GFF636 - Heme/hemopexin utilization protein C, at 678,369 to 680,576 GFF636 Position (kb) 676 677 678Strain fitness (log2 ratio) -1 0 1 2at 676.334 kb on + strandat 676.335 kb on - strandat 676.335 kb on - strandat 676.335 kb on - strandat 676.572 kb on + strand, within GFF634at 676.573 kb on - strand, within GFF634at 676.573 kb on - strand, within GFF634at 676.573 kb on - strand, within GFF634at 676.574 kb on + strand, within GFF634at 676.575 kb on - strand, within GFF634at 676.575 kb on - strand, within GFF634at 676.586 kb on + strand, within GFF634at 676.586 kb on + strand, within GFF634at 676.587 kb on - strand, within GFF634at 676.766 kb on + strand, within GFF634at 676.767 kb on - strand, within GFF634at 676.767 kb on - strand, within GFF634at 676.817 kb on + strand, within GFF634at 676.818 kb on - strand, within GFF634at 676.992 kb on + strand, within GFF634at 676.992 kb on + strand, within GFF634at 676.992 kb on + strand, within GFF634at 676.993 kb on - strand, within GFF634at 676.994 kb on + strand, within GFF634at 676.994 kb on + strand, within GFF634at 676.994 kb on + strand, within GFF634at 676.994 kb on + strand, within GFF634at 676.994 kb on + strand, within GFF634at 676.995 kb on - strand, within GFF634at 676.995 kb on - strand, within GFF634at 676.995 kb on - strand, within GFF634at 676.995 kb on - strand, within GFF634at 676.995 kb on - strand, within GFF634at 676.995 kb on - strand, within GFF634at 677.352 kb on - strand, within GFF634at 677.372 kb on + strand, within GFF634at 677.813 kb on + strandat 677.814 kb on - strandat 677.814 kb on - strandat 677.964 kb on + strandat 677.964 kb on + strandat 677.964 kb on + strandat 677.964 kb on + strandat 678.060 kb on + strand, within GFF635at 678.062 kb on + strand, within GFF635at 678.062 kb on + strand, within GFF635at 678.062 kb on + strand, within GFF635at 678.063 kb on - strand, within GFF635at 678.173 kb on + strand, within GFF635at 678.173 kb on + strand, within GFF635at 678.174 kb on - strand, within GFF635at 678.174 kb on - strand, within GFF635at 678.174 kb on - strand, within GFF635at 678.182 kb on + strand, within GFF635at 678.182 kb on + strand, within GFF635at 678.182 kb on + strand, within GFF635at 678.183 kb on - strand, within GFF635at 678.245 kb on + strand, within GFF635at 678.246 kb on - strand, within GFF635at 678.472 kb on + strandat 678.551 kb on - strandat 678.793 kb on + strand, within GFF636

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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676,334 + -0.2
676,335 - +0.6
676,335 - +0.7
676,335 - +0.3
676,572 + GFF634 0.16 +0.4
676,573 - GFF634 0.16 -0.9
676,573 - GFF634 0.16 -0.1
676,573 - GFF634 0.16 -0.2
676,574 + GFF634 0.16 +0.3
676,575 - GFF634 0.16 -1.7
676,575 - GFF634 0.16 +0.5
676,586 + GFF634 0.17 -0.5
676,586 + GFF634 0.17 -0.4
676,587 - GFF634 0.17 +1.9
676,766 + GFF634 0.29 +0.5
676,767 - GFF634 0.29 +0.1
676,767 - GFF634 0.29 +0.3
676,817 + GFF634 0.32 +0.3
676,818 - GFF634 0.33 +0.9
676,992 + GFF634 0.44 +0.1
676,992 + GFF634 0.44 +0.9
676,992 + GFF634 0.44 -0.2
676,993 - GFF634 0.44 +0.4
676,994 + GFF634 0.44 +1.0
676,994 + GFF634 0.44 +0.3
676,994 + GFF634 0.44 +0.4
676,994 + GFF634 0.44 +0.5
676,994 + GFF634 0.44 +0.3
676,995 - GFF634 0.44 -0.8
676,995 - GFF634 0.44 -0.6
676,995 - GFF634 0.44 +0.6
676,995 - GFF634 0.44 +0.8
676,995 - GFF634 0.44 +0.2
676,995 - GFF634 0.44 -0.7
677,352 - GFF634 0.68 -0.7
677,372 + GFF634 0.70 +0.6
677,813 + -0.2
677,814 - +0.9
677,814 - -0.4
677,964 + +0.9
677,964 + -0.1
677,964 + -0.9
677,964 + -0.1
678,060 + GFF635 0.20 -0.4
678,062 + GFF635 0.21 +0.2
678,062 + GFF635 0.21 -1.5
678,062 + GFF635 0.21 +0.5
678,063 - GFF635 0.21 -0.9
678,173 + GFF635 0.54 -0.8
678,173 + GFF635 0.54 +1.5
678,174 - GFF635 0.54 +0.5
678,174 - GFF635 0.54 +0.2
678,174 - GFF635 0.54 +0.1
678,182 + GFF635 0.57 -0.5
678,182 + GFF635 0.57 +0.7
678,182 + GFF635 0.57 +0.8
678,183 - GFF635 0.57 +1.7
678,245 + GFF635 0.75 +0.2
678,246 - GFF635 0.76 +1.0
678,472 + -1.3
678,551 - -0.1
678,793 + GFF636 0.19 -0.1

Or see this region's nucleotide sequence