Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF628 and GFF629 are separated by 12 nucleotides GFF629 and GFF630 are separated by 17 nucleotides GFF630 and GFF631 are separated by 131 nucleotides GFF631 and GFF632 are separated by 100 nucleotides
GFF628 - hypothetical protein, at 668,920 to 670,098
GFF628
GFF629 - hypothetical protein, at 670,111 to 670,563
GFF629
GFF630 - ATP-dependent DNA helicase RecG, at 670,581 to 672,674
GFF630
GFF631 - Protein-L-isoaspartate O-methyltransferase, at 672,806 to 673,477
GFF631
GFF632 - hypothetical protein, at 673,578 to 674,852
GFF632
Position (kb) 670
671
672
673 Strain fitness (log2 ratio) -1
0
1 at 670.200 kb on - strand, within GFF629 at 670.200 kb on - strand, within GFF629 at 670.200 kb on - strand, within GFF629 at 670.378 kb on + strand, within GFF629 at 670.378 kb on + strand, within GFF629 at 671.155 kb on - strand, within GFF630 at 671.164 kb on + strand, within GFF630 at 671.164 kb on + strand, within GFF630 at 672.206 kb on - strand, within GFF630 at 672.289 kb on + strand, within GFF630 at 672.290 kb on - strand, within GFF630 at 672.406 kb on + strand, within GFF630 at 672.406 kb on + strand, within GFF630 at 672.406 kb on + strand, within GFF630 at 672.406 kb on + strand, within GFF630 at 672.407 kb on - strand, within GFF630 at 672.596 kb on - strand at 672.782 kb on - strand at 673.220 kb on + strand, within GFF631
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 670,200 - GFF629 0.20 +0.8 670,200 - GFF629 0.20 -0.1 670,200 - GFF629 0.20 -0.3 670,378 + GFF629 0.59 -0.5 670,378 + GFF629 0.59 -0.1 671,155 - GFF630 0.27 -1.7 671,164 + GFF630 0.28 -0.5 671,164 + GFF630 0.28 +0.1 672,206 - GFF630 0.78 -0.1 672,289 + GFF630 0.82 +0.6 672,290 - GFF630 0.82 +0.8 672,406 + GFF630 0.87 +0.0 672,406 + GFF630 0.87 -0.7 672,406 + GFF630 0.87 -0.1 672,406 + GFF630 0.87 -0.2 672,407 - GFF630 0.87 +0.5 672,596 - -0.2 672,782 - +0.2 673,220 + GFF631 0.62 +0.9
Or see this region's nucleotide sequence