Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4900 and GFF4901 are separated by 20 nucleotides GFF4901 and GFF4902 are separated by 39 nucleotides GFF4902 and GFF4903 are separated by 124 nucleotides GFF4903 and GFF4904 are separated by 38 nucleotides
GFF4900 - putative chromate transport protein, at 3,593 to 4,846
GFF4900
GFF4901 - 3-mercaptopyruvate sulfurtransferase, at 4,867 to 5,676
GFF4901
GFF4902 - Multidrug resistance protein MdtH, at 5,716 to 6,942
GFF4902
GFF4903 - hypothetical protein, at 7,067 to 7,183
GFF4903
GFF4904 - hypothetical protein, at 7,222 to 8,367
GFF4904
Position (kb) 5
6
7 Strain fitness (log2 ratio) -1
0
1
2 at 5.047 kb on + strand, within GFF4901 at 5.048 kb on - strand, within GFF4901 at 5.517 kb on + strand, within GFF4901 at 5.602 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.606 kb on - strand at 5.606 kb on - strand at 5.790 kb on - strand at 5.897 kb on - strand, within GFF4902 at 6.102 kb on - strand, within GFF4902 at 6.116 kb on + strand, within GFF4902 at 6.117 kb on - strand, within GFF4902 at 6.117 kb on - strand, within GFF4902 at 6.163 kb on + strand, within GFF4902 at 6.762 kb on + strand, within GFF4902 at 6.762 kb on + strand, within GFF4902 at 7.080 kb on + strand, within GFF4903 at 7.176 kb on + strand at 7.177 kb on - strand at 7.177 kb on - strand at 7.242 kb on + strand at 7.242 kb on + strand at 7.242 kb on + strand at 7.243 kb on - strand at 7.243 kb on - strand at 7.310 kb on + strand at 7.310 kb on + strand at 7.310 kb on + strand at 7.310 kb on + strand at 7.311 kb on - strand at 7.311 kb on - strand at 7.346 kb on + strand, within GFF4904 at 7.346 kb on + strand, within GFF4904 at 7.346 kb on + strand, within GFF4904 at 7.347 kb on - strand, within GFF4904 at 7.347 kb on - strand, within GFF4904 at 7.347 kb on - strand, within GFF4904
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 5,047 + GFF4901 0.22 +0.9 5,048 - GFF4901 0.22 -0.8 5,517 + GFF4901 0.80 -0.8 5,602 + -0.2 5,605 + -1.1 5,605 + +0.5 5,605 + -0.3 5,605 + +0.6 5,605 + -0.6 5,605 + -0.2 5,606 - +0.3 5,606 - +1.4 5,790 - -0.2 5,897 - GFF4902 0.15 +0.6 6,102 - GFF4902 0.31 -1.0 6,116 + GFF4902 0.33 +0.0 6,117 - GFF4902 0.33 +0.9 6,117 - GFF4902 0.33 -0.2 6,163 + GFF4902 0.36 +1.2 6,762 + GFF4902 0.85 -0.7 6,762 + GFF4902 0.85 +1.2 7,080 + GFF4903 0.11 +0.5 7,176 + -0.3 7,177 - -0.4 7,177 - +2.2 7,242 + +0.5 7,242 + +1.3 7,242 + +0.9 7,243 - -0.1 7,243 - -0.5 7,310 + +0.4 7,310 + +0.6 7,310 + -1.2 7,310 + +0.7 7,311 - +0.3 7,311 - -0.9 7,346 + GFF4904 0.11 -0.6 7,346 + GFF4904 0.11 -0.0 7,346 + GFF4904 0.11 -1.2 7,347 - GFF4904 0.11 +0.1 7,347 - GFF4904 0.11 -0.2 7,347 - GFF4904 0.11 -0.2
Or see this region's nucleotide sequence