Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4881 and GFF4882 are separated by 45 nucleotides GFF4882 and GFF4883 are separated by 27 nucleotides GFF4883 and GFF4884 are separated by 24 nucleotides GFF4884 and GFF4885 are separated by 14 nucleotides GFF4885 and GFF4886 are separated by 92 nucleotides GFF4886 and GFF4887 are separated by 316 nucleotides
GFF4881 - hypothetical protein, at 28,492 to 28,971
GFF4881
GFF4882 - hypothetical protein, at 29,017 to 29,349
GFF4882
GFF4883 - hypothetical protein, at 29,377 to 29,544
GFF4883
GFF4884 - hypothetical protein, at 29,569 to 30,003
GFF4884
GFF4885 - hypothetical protein, at 30,018 to 30,257
GFF4885
GFF4886 - hypothetical protein, at 30,350 to 30,595
GFF4886
GFF4887 - hypothetical protein, at 30,912 to 31,397
GFF4887
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1 at 28.681 kb on + strand, within GFF4881 at 28.682 kb on - strand, within GFF4881 at 28.682 kb on - strand, within GFF4881 at 28.682 kb on - strand, within GFF4881 at 29.012 kb on + strand at 29.012 kb on + strand at 29.012 kb on + strand at 29.012 kb on + strand at 29.013 kb on - strand at 29.013 kb on - strand at 29.013 kb on - strand at 29.076 kb on + strand, within GFF4882 at 29.076 kb on + strand, within GFF4882 at 29.077 kb on - strand, within GFF4882 at 29.077 kb on - strand, within GFF4882 at 29.077 kb on - strand, within GFF4882 at 29.078 kb on + strand, within GFF4882 at 29.078 kb on + strand, within GFF4882 at 29.079 kb on - strand, within GFF4882 at 29.079 kb on - strand, within GFF4882 at 29.083 kb on + strand, within GFF4882 at 29.083 kb on + strand, within GFF4882 at 29.083 kb on + strand, within GFF4882 at 29.083 kb on + strand, within GFF4882 at 29.083 kb on + strand, within GFF4882 at 29.083 kb on + strand, within GFF4882 at 29.084 kb on - strand, within GFF4882 at 29.084 kb on - strand, within GFF4882 at 29.084 kb on - strand, within GFF4882 at 29.084 kb on - strand, within GFF4882 at 29.084 kb on - strand, within GFF4882 at 29.212 kb on + strand, within GFF4882 at 29.213 kb on - strand, within GFF4882 at 29.239 kb on + strand, within GFF4882 at 29.245 kb on + strand, within GFF4882 at 29.245 kb on + strand, within GFF4882 at 29.337 kb on - strand at 29.542 kb on + strand at 29.542 kb on + strand at 29.543 kb on - strand at 29.543 kb on - strand at 29.599 kb on + strand at 29.599 kb on + strand at 29.599 kb on + strand at 29.599 kb on + strand at 29.599 kb on + strand at 29.599 kb on + strand at 29.600 kb on - strand at 29.600 kb on - strand at 29.600 kb on - strand at 29.600 kb on - strand at 29.600 kb on - strand at 29.639 kb on + strand, within GFF4884 at 29.640 kb on - strand, within GFF4884 at 29.650 kb on + strand, within GFF4884 at 29.650 kb on + strand, within GFF4884 at 29.650 kb on + strand, within GFF4884 at 29.740 kb on + strand, within GFF4884 at 29.773 kb on + strand, within GFF4884 at 29.774 kb on - strand, within GFF4884 at 29.917 kb on + strand, within GFF4884 at 29.917 kb on + strand, within GFF4884 at 29.918 kb on - strand, within GFF4884 at 29.918 kb on - strand, within GFF4884 at 30.020 kb on - strand at 30.442 kb on - strand, within GFF4886 at 30.493 kb on - strand, within GFF4886 at 30.493 kb on - strand, within GFF4886 at 30.493 kb on - strand, within GFF4886 at 30.775 kb on + strand at 30.775 kb on + strand at 30.775 kb on + strand at 30.776 kb on - strand at 30.776 kb on - strand at 30.776 kb on - strand at 30.776 kb on - strand at 30.820 kb on - strand at 30.820 kb on - strand at 30.820 kb on - strand at 30.820 kb on - strand at 30.820 kb on - strand at 30.839 kb on + strand at 30.905 kb on - strand at 30.905 kb on - strand at 30.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 28,681 + GFF4881 0.39 +0.8 28,682 - GFF4881 0.40 -0.3 28,682 - GFF4881 0.40 -0.2 28,682 - GFF4881 0.40 -0.2 29,012 + +0.8 29,012 + -1.2 29,012 + -0.8 29,012 + -0.3 29,013 - -0.1 29,013 - +0.4 29,013 - +0.1 29,076 + GFF4882 0.18 -0.3 29,076 + GFF4882 0.18 +1.4 29,077 - GFF4882 0.18 +0.2 29,077 - GFF4882 0.18 +0.9 29,077 - GFF4882 0.18 +0.4 29,078 + GFF4882 0.18 -0.2 29,078 + GFF4882 0.18 -0.2 29,079 - GFF4882 0.19 -1.1 29,079 - GFF4882 0.19 -1.6 29,083 + GFF4882 0.20 +0.5 29,083 + GFF4882 0.20 -0.0 29,083 + GFF4882 0.20 -0.3 29,083 + GFF4882 0.20 -0.5 29,083 + GFF4882 0.20 +1.3 29,083 + GFF4882 0.20 -0.2 29,084 - GFF4882 0.20 -0.4 29,084 - GFF4882 0.20 +0.5 29,084 - GFF4882 0.20 -0.6 29,084 - GFF4882 0.20 -1.3 29,084 - GFF4882 0.20 +0.5 29,212 + GFF4882 0.59 -0.3 29,213 - GFF4882 0.59 -0.8 29,239 + GFF4882 0.67 +0.1 29,245 + GFF4882 0.68 -0.7 29,245 + GFF4882 0.68 -1.7 29,337 - +0.4 29,542 + -1.0 29,542 + -0.2 29,543 - +0.0 29,543 - +0.1 29,599 + -0.3 29,599 + +0.4 29,599 + +1.2 29,599 + -0.3 29,599 + +0.1 29,599 + -0.7 29,600 - -0.1 29,600 - -0.2 29,600 - +0.7 29,600 - +1.0 29,600 - +0.7 29,639 + GFF4884 0.16 +0.2 29,640 - GFF4884 0.16 +0.1 29,650 + GFF4884 0.19 +0.2 29,650 + GFF4884 0.19 +0.4 29,650 + GFF4884 0.19 +1.3 29,740 + GFF4884 0.39 +0.1 29,773 + GFF4884 0.47 -1.0 29,774 - GFF4884 0.47 -0.2 29,917 + GFF4884 0.80 -0.6 29,917 + GFF4884 0.80 -0.1 29,918 - GFF4884 0.80 -0.1 29,918 - GFF4884 0.80 -0.9 30,020 - -0.3 30,442 - GFF4886 0.37 -0.0 30,493 - GFF4886 0.58 -0.1 30,493 - GFF4886 0.58 -1.3 30,493 - GFF4886 0.58 -0.3 30,775 + -0.9 30,775 + -0.5 30,775 + +0.4 30,776 - +0.0 30,776 - +0.3 30,776 - +0.3 30,776 - -0.8 30,820 - +0.3 30,820 - +0.4 30,820 - +0.4 30,820 - +0.6 30,820 - +0.1 30,839 + +0.7 30,905 - +0.1 30,905 - -0.2 30,932 + -1.1
Or see this region's nucleotide sequence