Strain Fitness in Xanthobacter sp. DMC5 around GFF4803

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4802 and GFF4803 are separated by 1 nucleotidesGFF4803 and GFF4804 are separated by 25 nucleotidesGFF4804 and GFF4805 are separated by 102 nucleotides GFF4802 - Metal reductase, at 41,731 to 43,764 GFF4802 GFF4803 - Short-chain-enoyl-CoA hydratase, at 43,766 to 44,578 GFF4803 GFF4804 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 44,604 to 45,383 GFF4804 GFF4805 - Acetyl-coenzyme A synthetase, at 45,486 to 47,414 GFF4805 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2at 42.769 kb on - strand, within GFF4802at 42.816 kb on + strand, within GFF4802at 42.817 kb on - strand, within GFF4802at 42.817 kb on - strand, within GFF4802at 42.817 kb on - strand, within GFF4802at 42.838 kb on + strand, within GFF4802at 42.839 kb on - strand, within GFF4802at 42.839 kb on - strand, within GFF4802at 42.906 kb on + strand, within GFF4802at 42.906 kb on + strand, within GFF4802at 42.906 kb on + strand, within GFF4802at 42.907 kb on - strand, within GFF4802at 42.930 kb on - strand, within GFF4802at 42.963 kb on - strand, within GFF4802at 42.963 kb on - strand, within GFF4802at 42.963 kb on - strand, within GFF4802at 43.196 kb on + strand, within GFF4802at 43.197 kb on - strand, within GFF4802at 43.277 kb on + strand, within GFF4802at 43.278 kb on - strand, within GFF4802at 43.278 kb on - strand, within GFF4802at 43.368 kb on - strand, within GFF4802at 43.368 kb on - strand, within GFF4802at 43.466 kb on + strand, within GFF4802at 43.466 kb on + strand, within GFF4802at 43.626 kb on - strandat 43.695 kb on + strandat 43.696 kb on - strandat 43.748 kb on + strandat 43.748 kb on + strandat 43.748 kb on + strandat 43.749 kb on - strandat 43.820 kb on + strandat 43.964 kb on + strand, within GFF4803at 43.964 kb on + strand, within GFF4803at 43.964 kb on + strand, within GFF4803at 43.965 kb on - strand, within GFF4803at 43.965 kb on - strand, within GFF4803at 44.076 kb on + strand, within GFF4803at 44.076 kb on + strand, within GFF4803at 44.077 kb on - strand, within GFF4803at 44.077 kb on - strand, within GFF4803at 44.283 kb on + strand, within GFF4803at 44.283 kb on + strand, within GFF4803at 44.284 kb on - strand, within GFF4803at 44.348 kb on + strand, within GFF4803at 44.348 kb on + strand, within GFF4803at 44.349 kb on - strand, within GFF4803at 44.349 kb on - strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.562 kb on + strandat 44.563 kb on - strandat 44.563 kb on - strandat 44.662 kb on + strandat 44.662 kb on + strandat 44.663 kb on - strandat 44.663 kb on - strandat 44.738 kb on - strand, within GFF4804at 44.756 kb on + strand, within GFF4804at 44.756 kb on + strand, within GFF4804at 44.757 kb on - strand, within GFF4804at 44.758 kb on + strand, within GFF4804at 44.759 kb on - strand, within GFF4804at 44.759 kb on - strand, within GFF4804at 44.759 kb on - strand, within GFF4804at 44.804 kb on + strand, within GFF4804at 44.804 kb on + strand, within GFF4804at 44.895 kb on - strand, within GFF4804at 44.935 kb on + strand, within GFF4804at 45.014 kb on - strand, within GFF4804at 45.014 kb on - strand, within GFF4804at 45.038 kb on - strand, within GFF4804at 45.348 kb on - strandat 45.348 kb on - strandat 45.385 kb on + strandat 45.386 kb on - strandat 45.386 kb on - strandat 45.503 kb on + strandat 45.503 kb on + strandat 45.503 kb on + strandat 45.503 kb on + strandat 45.504 kb on - strandat 45.504 kb on - strandat 45.571 kb on + strandat 45.571 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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42,769 - GFF4802 0.51 +0.2
42,816 + GFF4802 0.53 +0.3
42,817 - GFF4802 0.53 +0.3
42,817 - GFF4802 0.53 -0.4
42,817 - GFF4802 0.53 +0.0
42,838 + GFF4802 0.54 -0.2
42,839 - GFF4802 0.54 -0.5
42,839 - GFF4802 0.54 +0.1
42,906 + GFF4802 0.58 -0.1
42,906 + GFF4802 0.58 +0.3
42,906 + GFF4802 0.58 +0.6
42,907 - GFF4802 0.58 -0.4
42,930 - GFF4802 0.59 +0.2
42,963 - GFF4802 0.61 -0.4
42,963 - GFF4802 0.61 +0.8
42,963 - GFF4802 0.61 +0.2
43,196 + GFF4802 0.72 +1.3
43,197 - GFF4802 0.72 -0.0
43,277 + GFF4802 0.76 +0.3
43,278 - GFF4802 0.76 +0.6
43,278 - GFF4802 0.76 +0.9
43,368 - GFF4802 0.80 -0.2
43,368 - GFF4802 0.80 +0.3
43,466 + GFF4802 0.85 -0.1
43,466 + GFF4802 0.85 +1.0
43,626 - +0.9
43,695 + +0.1
43,696 - -1.2
43,748 + -0.2
43,748 + +0.0
43,748 + +1.3
43,749 - +0.3
43,820 + +0.2
43,964 + GFF4803 0.24 +0.8
43,964 + GFF4803 0.24 +2.1
43,964 + GFF4803 0.24 -0.5
43,965 - GFF4803 0.24 +0.2
43,965 - GFF4803 0.24 -1.2
44,076 + GFF4803 0.38 +0.7
44,076 + GFF4803 0.38 +0.1
44,077 - GFF4803 0.38 -0.9
44,077 - GFF4803 0.38 +0.2
44,283 + GFF4803 0.64 -0.7
44,283 + GFF4803 0.64 -0.3
44,284 - GFF4803 0.64 -0.2
44,348 + GFF4803 0.72 +0.9
44,348 + GFF4803 0.72 +0.5
44,349 - GFF4803 0.72 +1.5
44,349 - GFF4803 0.72 -2.1
44,447 + GFF4803 0.84 +0.9
44,447 + GFF4803 0.84 +0.0
44,447 + GFF4803 0.84 -1.2
44,447 + GFF4803 0.84 +1.2
44,447 + GFF4803 0.84 +0.7
44,448 - GFF4803 0.84 -0.9
44,448 - GFF4803 0.84 +0.2
44,448 - GFF4803 0.84 -0.9
44,562 + +0.8
44,563 - +0.7
44,563 - -0.3
44,662 + -0.2
44,662 + -0.2
44,663 - +0.3
44,663 - +0.1
44,738 - GFF4804 0.17 -1.5
44,756 + GFF4804 0.19 -0.1
44,756 + GFF4804 0.19 +1.1
44,757 - GFF4804 0.20 +0.5
44,758 + GFF4804 0.20 -0.2
44,759 - GFF4804 0.20 +1.1
44,759 - GFF4804 0.20 -0.4
44,759 - GFF4804 0.20 +0.0
44,804 + GFF4804 0.26 +0.2
44,804 + GFF4804 0.26 -1.2
44,895 - GFF4804 0.37 -0.6
44,935 + GFF4804 0.42 -0.0
45,014 - GFF4804 0.53 -0.4
45,014 - GFF4804 0.53 +1.8
45,038 - GFF4804 0.56 -0.2
45,348 - -0.0
45,348 - +0.2
45,385 + +0.5
45,386 - +0.3
45,386 - -0.7
45,503 + -0.7
45,503 + -0.8
45,503 + +0.2
45,503 + -0.5
45,504 - -0.6
45,504 - +0.9
45,571 + -0.6
45,571 + -0.8

Or see this region's nucleotide sequence