Strain Fitness in Xanthobacter sp. DMC5 around GFF4778

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4777 and GFF4778 are separated by 41 nucleotidesGFF4778 and GFF4779 are separated by 35 nucleotidesGFF4779 and GFF4780 are separated by 4 nucleotides GFF4777 - 1,3-propanediol dehydrogenase, at 17,458 to 18,597 GFF4777 GFF4778 - Acetyl-CoA:oxalate CoA-transferase, at 18,639 to 19,781 GFF4778 GFF4779 - hypothetical protein, at 19,817 to 20,209 GFF4779 GFF4780 - hypothetical protein, at 20,214 to 21,374 GFF4780 Position (kb) 18 19 20Strain fitness (log2 ratio) -2 -1 0 1 2at 17.698 kb on - strand, within GFF4777at 17.812 kb on + strand, within GFF4777at 17.812 kb on + strand, within GFF4777at 17.812 kb on + strand, within GFF4777at 17.812 kb on + strand, within GFF4777at 17.812 kb on + strand, within GFF4777at 17.812 kb on + strand, within GFF4777at 17.813 kb on - strand, within GFF4777at 17.813 kb on - strand, within GFF4777at 17.813 kb on - strand, within GFF4777at 17.813 kb on - strand, within GFF4777at 17.813 kb on - strand, within GFF4777at 17.883 kb on + strand, within GFF4777at 17.884 kb on - strand, within GFF4777at 17.978 kb on + strand, within GFF4777at 17.978 kb on + strand, within GFF4777at 17.978 kb on + strand, within GFF4777at 17.978 kb on + strand, within GFF4777at 17.978 kb on + strand, within GFF4777at 17.978 kb on + strand, within GFF4777at 17.979 kb on - strand, within GFF4777at 17.993 kb on + strand, within GFF4777at 17.993 kb on + strand, within GFF4777at 17.993 kb on + strand, within GFF4777at 17.993 kb on + strand, within GFF4777at 17.993 kb on + strand, within GFF4777at 17.994 kb on - strand, within GFF4777at 17.994 kb on - strand, within GFF4777at 18.042 kb on + strand, within GFF4777at 18.042 kb on + strand, within GFF4777at 18.043 kb on - strand, within GFF4777at 18.043 kb on - strand, within GFF4777at 18.043 kb on - strand, within GFF4777at 18.248 kb on + strand, within GFF4777at 18.248 kb on + strand, within GFF4777at 18.496 kb on + strandat 18.496 kb on + strandat 18.496 kb on + strandat 18.497 kb on - strandat 18.497 kb on - strandat 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.069 kb on + strand, within GFF4778at 19.070 kb on - strand, within GFF4778at 19.070 kb on - strand, within GFF4778at 19.070 kb on - strand, within GFF4778at 19.070 kb on - strand, within GFF4778at 19.070 kb on - strand, within GFF4778at 19.070 kb on - strand, within GFF4778at 19.070 kb on - strand, within GFF4778at 19.090 kb on + strand, within GFF4778at 19.091 kb on - strand, within GFF4778at 19.091 kb on - strand, within GFF4778at 19.100 kb on - strand, within GFF4778at 19.103 kb on - strand, within GFF4778at 19.254 kb on + strand, within GFF4778at 19.255 kb on - strand, within GFF4778at 19.282 kb on + strand, within GFF4778at 19.282 kb on + strand, within GFF4778at 19.283 kb on - strand, within GFF4778at 19.380 kb on - strand, within GFF4778at 19.380 kb on - strand, within GFF4778at 19.381 kb on + strand, within GFF4778at 19.382 kb on - strand, within GFF4778at 19.382 kb on - strand, within GFF4778at 19.382 kb on - strand, within GFF4778at 19.447 kb on + strand, within GFF4778at 19.447 kb on + strand, within GFF4778at 19.447 kb on + strand, within GFF4778at 19.447 kb on + strand, within GFF4778at 19.448 kb on - strand, within GFF4778at 19.448 kb on - strand, within GFF4778at 19.448 kb on - strand, within GFF4778at 19.448 kb on - strand, within GFF4778at 19.560 kb on + strand, within GFF4778at 19.560 kb on + strand, within GFF4778at 19.560 kb on + strand, within GFF4778at 19.561 kb on - strand, within GFF4778at 19.561 kb on - strand, within GFF4778at 19.561 kb on - strand, within GFF4778at 19.561 kb on - strand, within GFF4778at 19.630 kb on + strand, within GFF4778at 19.630 kb on + strand, within GFF4778at 19.630 kb on + strand, within GFF4778at 19.630 kb on + strand, within GFF4778at 19.631 kb on - strand, within GFF4778at 19.877 kb on + strand, within GFF4779at 19.877 kb on + strand, within GFF4779at 19.878 kb on - strand, within GFF4779at 19.968 kb on + strand, within GFF4779at 19.969 kb on - strand, within GFF4779at 19.969 kb on - strand, within GFF4779at 19.969 kb on - strand, within GFF4779at 19.969 kb on - strand, within GFF4779at 19.980 kb on + strand, within GFF4779at 20.010 kb on + strand, within GFF4779at 20.011 kb on - strand, within GFF4779at 20.011 kb on - strand, within GFF4779at 20.011 kb on - strand, within GFF4779at 20.016 kb on + strand, within GFF4779at 20.016 kb on + strand, within GFF4779at 20.017 kb on - strand, within GFF4779at 20.088 kb on + strand, within GFF4779at 20.089 kb on - strand, within GFF4779at 20.099 kb on + strand, within GFF4779at 20.099 kb on + strand, within GFF4779at 20.100 kb on - strand, within GFF4779at 20.100 kb on - strand, within GFF4779at 20.100 kb on - strand, within GFF4779at 20.154 kb on + strand, within GFF4779at 20.155 kb on - strand, within GFF4779at 20.155 kb on - strand, within GFF4779at 20.414 kb on + strand, within GFF4780at 20.414 kb on + strand, within GFF4780at 20.539 kb on + strand, within GFF4780at 20.551 kb on + strand, within GFF4780at 20.551 kb on + strand, within GFF4780at 20.551 kb on + strand, within GFF4780at 20.552 kb on - strand, within GFF4780at 20.552 kb on - strand, within GFF4780at 20.552 kb on - strand, within GFF4780at 20.552 kb on - strand, within GFF4780at 20.552 kb on - strand, within GFF4780

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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17,698 - GFF4777 0.21 +0.3
17,812 + GFF4777 0.31 -1.4
17,812 + GFF4777 0.31 +0.1
17,812 + GFF4777 0.31 +0.8
17,812 + GFF4777 0.31 +0.3
17,812 + GFF4777 0.31 +0.9
17,812 + GFF4777 0.31 +1.1
17,813 - GFF4777 0.31 +0.7
17,813 - GFF4777 0.31 -0.2
17,813 - GFF4777 0.31 -1.8
17,813 - GFF4777 0.31 -1.1
17,813 - GFF4777 0.31 +0.3
17,883 + GFF4777 0.37 -0.1
17,884 - GFF4777 0.37 -1.1
17,978 + GFF4777 0.46 +0.8
17,978 + GFF4777 0.46 +0.5
17,978 + GFF4777 0.46 -1.2
17,978 + GFF4777 0.46 -1.1
17,978 + GFF4777 0.46 +0.1
17,978 + GFF4777 0.46 +1.0
17,979 - GFF4777 0.46 +0.5
17,993 + GFF4777 0.47 -0.1
17,993 + GFF4777 0.47 -0.4
17,993 + GFF4777 0.47 -0.2
17,993 + GFF4777 0.47 -0.7
17,993 + GFF4777 0.47 +0.0
17,994 - GFF4777 0.47 +0.0
17,994 - GFF4777 0.47 +1.2
18,042 + GFF4777 0.51 -0.4
18,042 + GFF4777 0.51 -0.4
18,043 - GFF4777 0.51 +0.3
18,043 - GFF4777 0.51 -0.2
18,043 - GFF4777 0.51 +0.2
18,248 + GFF4777 0.69 +0.8
18,248 + GFF4777 0.69 -0.6
18,496 + +0.1
18,496 + -0.1
18,496 + +0.1
18,497 - -0.0
18,497 - -1.2
19,069 + GFF4778 0.38 +0.4
19,069 + GFF4778 0.38 -0.1
19,069 + GFF4778 0.38 +0.0
19,069 + GFF4778 0.38 -2.1
19,069 + GFF4778 0.38 -0.1
19,069 + GFF4778 0.38 +0.6
19,069 + GFF4778 0.38 +0.3
19,069 + GFF4778 0.38 -0.5
19,069 + GFF4778 0.38 +0.2
19,069 + GFF4778 0.38 -0.0
19,070 - GFF4778 0.38 -0.2
19,070 - GFF4778 0.38 +0.4
19,070 - GFF4778 0.38 +0.0
19,070 - GFF4778 0.38 -0.7
19,070 - GFF4778 0.38 -0.1
19,070 - GFF4778 0.38 +0.1
19,070 - GFF4778 0.38 -0.2
19,090 + GFF4778 0.39 +0.1
19,091 - GFF4778 0.40 -2.0
19,091 - GFF4778 0.40 -0.4
19,100 - GFF4778 0.40 -1.8
19,103 - GFF4778 0.41 -0.6
19,254 + GFF4778 0.54 -0.5
19,255 - GFF4778 0.54 -1.5
19,282 + GFF4778 0.56 -0.8
19,282 + GFF4778 0.56 -1.2
19,283 - GFF4778 0.56 -0.9
19,380 - GFF4778 0.65 -0.2
19,380 - GFF4778 0.65 -1.1
19,381 + GFF4778 0.65 +0.2
19,382 - GFF4778 0.65 -0.0
19,382 - GFF4778 0.65 -0.3
19,382 - GFF4778 0.65 -0.5
19,447 + GFF4778 0.71 +0.9
19,447 + GFF4778 0.71 -0.7
19,447 + GFF4778 0.71 +1.9
19,447 + GFF4778 0.71 +0.8
19,448 - GFF4778 0.71 -0.7
19,448 - GFF4778 0.71 -0.4
19,448 - GFF4778 0.71 +0.3
19,448 - GFF4778 0.71 +0.9
19,560 + GFF4778 0.81 +0.2
19,560 + GFF4778 0.81 -0.2
19,560 + GFF4778 0.81 +0.3
19,561 - GFF4778 0.81 +0.5
19,561 - GFF4778 0.81 -0.1
19,561 - GFF4778 0.81 +0.5
19,561 - GFF4778 0.81 +0.8
19,630 + GFF4778 0.87 +1.4
19,630 + GFF4778 0.87 -0.3
19,630 + GFF4778 0.87 +0.5
19,630 + GFF4778 0.87 +0.0
19,631 - GFF4778 0.87 +0.7
19,877 + GFF4779 0.15 -0.1
19,877 + GFF4779 0.15 -0.6
19,878 - GFF4779 0.16 -0.7
19,968 + GFF4779 0.38 +0.1
19,969 - GFF4779 0.39 +0.7
19,969 - GFF4779 0.39 +0.2
19,969 - GFF4779 0.39 -1.5
19,969 - GFF4779 0.39 -0.1
19,980 + GFF4779 0.41 +0.3
20,010 + GFF4779 0.49 +0.6
20,011 - GFF4779 0.49 +1.2
20,011 - GFF4779 0.49 +0.0
20,011 - GFF4779 0.49 +0.8
20,016 + GFF4779 0.51 -0.7
20,016 + GFF4779 0.51 -1.0
20,017 - GFF4779 0.51 +1.3
20,088 + GFF4779 0.69 +0.6
20,089 - GFF4779 0.69 -0.1
20,099 + GFF4779 0.72 -0.2
20,099 + GFF4779 0.72 -0.3
20,100 - GFF4779 0.72 +1.3
20,100 - GFF4779 0.72 +0.0
20,100 - GFF4779 0.72 -0.2
20,154 + GFF4779 0.86 -0.3
20,155 - GFF4779 0.86 -0.3
20,155 - GFF4779 0.86 +1.1
20,414 + GFF4780 0.17 -1.5
20,414 + GFF4780 0.17 -0.4
20,539 + GFF4780 0.28 -0.1
20,551 + GFF4780 0.29 -0.4
20,551 + GFF4780 0.29 +0.9
20,551 + GFF4780 0.29 -0.2
20,552 - GFF4780 0.29 -1.4
20,552 - GFF4780 0.29 +0.6
20,552 - GFF4780 0.29 +0.3
20,552 - GFF4780 0.29 -0.7
20,552 - GFF4780 0.29 -0.7

Or see this region's nucleotide sequence