Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4723 and GFF4724 are separated by 3 nucleotides GFF4724 and GFF4725 are separated by 46 nucleotides GFF4725 and GFF4726 are separated by 178 nucleotides GFF4726 and GFF4727 are separated by 24 nucleotides
GFF4723 - Multidrug resistance ABC transporter ATP-binding/permease protein BmrA, at 133,537 to 135,351
GFF4723
GFF4724 - hypothetical protein, at 135,355 to 135,885
GFF4724
GFF4725 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 135,932 to 137,011
GFF4725
GFF4726 - hypothetical protein, at 137,190 to 137,870
GFF4726
GFF4727 - hypothetical protein, at 137,895 to 138,491
GFF4727
Position (kb) 135
136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 135.311 kb on - strand at 135.758 kb on - strand, within GFF4724 at 135.758 kb on - strand, within GFF4724 at 135.804 kb on + strand, within GFF4724 at 135.805 kb on - strand, within GFF4724 at 135.806 kb on + strand, within GFF4724 at 135.807 kb on - strand, within GFF4724 at 135.911 kb on + strand at 135.911 kb on + strand at 135.912 kb on - strand at 135.912 kb on - strand at 136.119 kb on + strand, within GFF4725 at 136.270 kb on + strand, within GFF4725 at 136.271 kb on - strand, within GFF4725 at 136.436 kb on + strand, within GFF4725 at 136.474 kb on + strand, within GFF4725 at 136.474 kb on + strand, within GFF4725 at 136.475 kb on - strand, within GFF4725 at 136.491 kb on + strand, within GFF4725 at 136.492 kb on - strand, within GFF4725 at 136.524 kb on + strand, within GFF4725 at 136.525 kb on - strand, within GFF4725 at 136.525 kb on - strand, within GFF4725 at 136.602 kb on + strand, within GFF4725 at 136.887 kb on + strand, within GFF4725 at 136.887 kb on + strand, within GFF4725 at 136.887 kb on + strand, within GFF4725 at 136.888 kb on - strand, within GFF4725 at 136.888 kb on - strand, within GFF4725 at 136.888 kb on - strand, within GFF4725 at 136.912 kb on - strand at 137.016 kb on - strand at 137.089 kb on + strand at 137.089 kb on + strand at 137.090 kb on - strand at 137.230 kb on - strand at 137.252 kb on + strand at 137.252 kb on + strand at 137.253 kb on - strand at 137.566 kb on + strand, within GFF4726 at 137.745 kb on - strand, within GFF4726 at 137.745 kb on - strand, within GFF4726 at 137.745 kb on - strand, within GFF4726 at 137.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 135,311 - +0.7 135,758 - GFF4724 0.76 +1.0 135,758 - GFF4724 0.76 +0.5 135,804 + GFF4724 0.85 -0.2 135,805 - GFF4724 0.85 +0.6 135,806 + GFF4724 0.85 +1.4 135,807 - GFF4724 0.85 -0.6 135,911 + -0.4 135,911 + +0.7 135,912 - +0.4 135,912 - -1.0 136,119 + GFF4725 0.17 +0.6 136,270 + GFF4725 0.31 -0.0 136,271 - GFF4725 0.31 +0.3 136,436 + GFF4725 0.47 -3.1 136,474 + GFF4725 0.50 -0.4 136,474 + GFF4725 0.50 +0.7 136,475 - GFF4725 0.50 -0.2 136,491 + GFF4725 0.52 +1.2 136,492 - GFF4725 0.52 +0.7 136,524 + GFF4725 0.55 +0.4 136,525 - GFF4725 0.55 -0.8 136,525 - GFF4725 0.55 -2.9 136,602 + GFF4725 0.62 -0.3 136,887 + GFF4725 0.88 +0.6 136,887 + GFF4725 0.88 -0.1 136,887 + GFF4725 0.88 +0.2 136,888 - GFF4725 0.89 +0.7 136,888 - GFF4725 0.89 +1.2 136,888 - GFF4725 0.89 -0.3 136,912 - -0.7 137,016 - -0.5 137,089 + -0.3 137,089 + -0.7 137,090 - -0.0 137,230 - -0.2 137,252 + -1.4 137,252 + +0.5 137,253 - -1.5 137,566 + GFF4726 0.55 +0.3 137,745 - GFF4726 0.81 +0.8 137,745 - GFF4726 0.81 +0.1 137,745 - GFF4726 0.81 -0.6 137,827 - -2.1
Or see this region's nucleotide sequence