Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4658 and GFF4659 are separated by 139 nucleotides GFF4659 and GFF4660 are separated by 148 nucleotides GFF4660 and GFF4661 are separated by 114 nucleotides
GFF4658 - Diaminopimelate decarboxylase, at 65,895 to 67,184
GFF4658
GFF4659 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 67,324 to 68,301
GFF4659
GFF4660 - hypothetical protein, at 68,450 to 68,959
GFF4660
GFF4661 - hypothetical protein, at 69,074 to 69,604
GFF4661
Position (kb) 67
68
69 Strain fitness (log2 ratio) -1
0
1 at 66.403 kb on - strand, within GFF4658 at 66.478 kb on + strand, within GFF4658 at 66.531 kb on + strand, within GFF4658 at 66.532 kb on - strand, within GFF4658 at 66.532 kb on - strand, within GFF4658 at 66.532 kb on - strand, within GFF4658 at 66.532 kb on - strand, within GFF4658 at 66.562 kb on + strand, within GFF4658 at 66.624 kb on + strand, within GFF4658 at 66.625 kb on - strand, within GFF4658 at 66.884 kb on + strand, within GFF4658 at 66.884 kb on + strand, within GFF4658 at 66.949 kb on - strand, within GFF4658 at 66.949 kb on - strand, within GFF4658 at 66.993 kb on + strand, within GFF4658 at 66.993 kb on + strand, within GFF4658 at 66.993 kb on + strand, within GFF4658 at 66.994 kb on - strand, within GFF4658 at 66.994 kb on - strand, within GFF4658 at 66.994 kb on - strand, within GFF4658 at 66.996 kb on - strand, within GFF4658 at 67.051 kb on - strand, within GFF4658 at 67.087 kb on - strand at 67.325 kb on + strand at 67.325 kb on + strand at 67.326 kb on - strand at 67.358 kb on + strand at 67.358 kb on + strand at 67.358 kb on + strand at 67.358 kb on + strand at 67.359 kb on - strand at 67.374 kb on - strand at 67.494 kb on - strand, within GFF4659 at 67.707 kb on - strand, within GFF4659 at 67.707 kb on - strand, within GFF4659 at 67.708 kb on - strand, within GFF4659 at 67.778 kb on + strand, within GFF4659 at 67.778 kb on + strand, within GFF4659 at 67.779 kb on - strand, within GFF4659 at 67.779 kb on - strand, within GFF4659 at 67.779 kb on - strand, within GFF4659 at 67.880 kb on + strand, within GFF4659 at 68.019 kb on - strand, within GFF4659 at 68.031 kb on - strand, within GFF4659 at 68.031 kb on - strand, within GFF4659 at 68.080 kb on + strand, within GFF4659 at 68.080 kb on + strand, within GFF4659 at 68.112 kb on - strand, within GFF4659 at 68.237 kb on + strand at 68.431 kb on + strand at 68.432 kb on - strand at 68.632 kb on - strand, within GFF4660 at 68.748 kb on + strand, within GFF4660 at 68.752 kb on - strand, within GFF4660 at 69.053 kb on - strand at 69.053 kb on - strand at 69.131 kb on + strand, within GFF4661 at 69.131 kb on + strand, within GFF4661 at 69.241 kb on + strand, within GFF4661 at 69.242 kb on - strand, within GFF4661 at 69.243 kb on + strand, within GFF4661 at 69.243 kb on + strand, within GFF4661 at 69.243 kb on + strand, within GFF4661 at 69.244 kb on - strand, within GFF4661 at 69.244 kb on - strand, within GFF4661 at 69.244 kb on - strand, within GFF4661
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 66,403 - GFF4658 0.39 -0.1 66,478 + GFF4658 0.45 +0.8 66,531 + GFF4658 0.49 +0.4 66,532 - GFF4658 0.49 -0.1 66,532 - GFF4658 0.49 +0.1 66,532 - GFF4658 0.49 +0.2 66,532 - GFF4658 0.49 -1.0 66,562 + GFF4658 0.52 -0.5 66,624 + GFF4658 0.57 +1.0 66,625 - GFF4658 0.57 +0.8 66,884 + GFF4658 0.77 -0.5 66,884 + GFF4658 0.77 +0.9 66,949 - GFF4658 0.82 -0.4 66,949 - GFF4658 0.82 -0.8 66,993 + GFF4658 0.85 +0.5 66,993 + GFF4658 0.85 -0.5 66,993 + GFF4658 0.85 +0.2 66,994 - GFF4658 0.85 +0.4 66,994 - GFF4658 0.85 +0.2 66,994 - GFF4658 0.85 -0.2 66,996 - GFF4658 0.85 +0.1 67,051 - GFF4658 0.90 -0.4 67,087 - -0.8 67,325 + +0.1 67,325 + +0.6 67,326 - -0.1 67,358 + -0.6 67,358 + -0.1 67,358 + -0.1 67,358 + +0.0 67,359 - -0.5 67,374 - +0.6 67,494 - GFF4659 0.17 +0.6 67,707 - GFF4659 0.39 -0.5 67,707 - GFF4659 0.39 +0.4 67,708 - GFF4659 0.39 -0.4 67,778 + GFF4659 0.46 -0.7 67,778 + GFF4659 0.46 +0.4 67,779 - GFF4659 0.47 -0.4 67,779 - GFF4659 0.47 -0.1 67,779 - GFF4659 0.47 +0.0 67,880 + GFF4659 0.57 -0.7 68,019 - GFF4659 0.71 -0.6 68,031 - GFF4659 0.72 +0.7 68,031 - GFF4659 0.72 +0.3 68,080 + GFF4659 0.77 -0.2 68,080 + GFF4659 0.77 +0.1 68,112 - GFF4659 0.81 -0.6 68,237 + -0.6 68,431 + +0.0 68,432 - +0.1 68,632 - GFF4660 0.36 +0.7 68,748 + GFF4660 0.58 +0.5 68,752 - GFF4660 0.59 +0.2 69,053 - +0.6 69,053 - +0.1 69,131 + GFF4661 0.11 +0.3 69,131 + GFF4661 0.11 +1.2 69,241 + GFF4661 0.31 +1.1 69,242 - GFF4661 0.32 +0.1 69,243 + GFF4661 0.32 +0.2 69,243 + GFF4661 0.32 -0.4 69,243 + GFF4661 0.32 +0.9 69,244 - GFF4661 0.32 -0.3 69,244 - GFF4661 0.32 -0.2 69,244 - GFF4661 0.32 +0.5
Or see this region's nucleotide sequence