Strain Fitness in Xanthobacter sp. DMC5 around GFF4658

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4656 and GFF4657 overlap by 4 nucleotidesGFF4657 and GFF4658 are separated by 197 nucleotidesGFF4658 and GFF4659 are separated by 139 nucleotides GFF4656 - Ribonuclease, at 64,466 to 65,158 GFF4656 GFF4657 - hypothetical protein, at 65,155 to 65,697 GFF4657 GFF4658 - Diaminopimelate decarboxylase, at 65,895 to 67,184 GFF4658 GFF4659 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 67,324 to 68,301 GFF4659 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -2 -1 0 1at 64.906 kb on - strand, within GFF4656at 64.998 kb on + strand, within GFF4656at 64.999 kb on - strand, within GFF4656at 64.999 kb on - strand, within GFF4656at 64.999 kb on - strand, within GFF4656at 65.029 kb on - strand, within GFF4656at 65.029 kb on - strand, within GFF4656at 65.193 kb on - strandat 65.270 kb on + strand, within GFF4657at 65.271 kb on - strand, within GFF4657at 65.271 kb on - strand, within GFF4657at 65.273 kb on + strand, within GFF4657at 65.273 kb on + strand, within GFF4657at 65.273 kb on + strand, within GFF4657at 65.274 kb on - strand, within GFF4657at 65.274 kb on - strand, within GFF4657at 65.492 kb on + strand, within GFF4657at 65.493 kb on - strand, within GFF4657at 65.493 kb on - strand, within GFF4657at 65.737 kb on - strandat 65.796 kb on + strandat 65.796 kb on + strandat 66.015 kb on + strandat 66.015 kb on + strandat 66.016 kb on - strandat 66.016 kb on - strandat 66.219 kb on + strand, within GFF4658at 66.219 kb on + strand, within GFF4658at 66.220 kb on - strand, within GFF4658at 66.220 kb on - strand, within GFF4658at 66.220 kb on - strand, within GFF4658at 66.403 kb on - strand, within GFF4658at 66.478 kb on + strand, within GFF4658at 66.531 kb on + strand, within GFF4658at 66.532 kb on - strand, within GFF4658at 66.532 kb on - strand, within GFF4658at 66.532 kb on - strand, within GFF4658at 66.532 kb on - strand, within GFF4658at 66.562 kb on + strand, within GFF4658at 66.624 kb on + strand, within GFF4658at 66.625 kb on - strand, within GFF4658at 66.884 kb on + strand, within GFF4658at 66.884 kb on + strand, within GFF4658at 66.949 kb on - strand, within GFF4658at 66.949 kb on - strand, within GFF4658at 66.993 kb on + strand, within GFF4658at 66.993 kb on + strand, within GFF4658at 66.993 kb on + strand, within GFF4658at 66.994 kb on - strand, within GFF4658at 66.994 kb on - strand, within GFF4658at 66.994 kb on - strand, within GFF4658at 66.996 kb on - strand, within GFF4658at 67.051 kb on - strand, within GFF4658at 67.087 kb on - strandat 67.325 kb on + strandat 67.325 kb on + strandat 67.326 kb on - strandat 67.358 kb on + strandat 67.358 kb on + strandat 67.358 kb on + strandat 67.358 kb on + strandat 67.359 kb on - strandat 67.374 kb on - strandat 67.494 kb on - strand, within GFF4659at 67.707 kb on - strand, within GFF4659at 67.707 kb on - strand, within GFF4659at 67.708 kb on - strand, within GFF4659at 67.778 kb on + strand, within GFF4659at 67.778 kb on + strand, within GFF4659at 67.779 kb on - strand, within GFF4659at 67.779 kb on - strand, within GFF4659at 67.779 kb on - strand, within GFF4659at 67.880 kb on + strand, within GFF4659at 68.019 kb on - strand, within GFF4659at 68.031 kb on - strand, within GFF4659at 68.031 kb on - strand, within GFF4659at 68.080 kb on + strand, within GFF4659at 68.080 kb on + strand, within GFF4659at 68.112 kb on - strand, within GFF4659

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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64,906 - GFF4656 0.63 +1.2
64,998 + GFF4656 0.77 +0.8
64,999 - GFF4656 0.77 +0.8
64,999 - GFF4656 0.77 +0.9
64,999 - GFF4656 0.77 +1.5
65,029 - GFF4656 0.81 +0.7
65,029 - GFF4656 0.81 +1.0
65,193 - +0.2
65,270 + GFF4657 0.21 +0.6
65,271 - GFF4657 0.21 +0.2
65,271 - GFF4657 0.21 -0.5
65,273 + GFF4657 0.22 +0.3
65,273 + GFF4657 0.22 +0.9
65,273 + GFF4657 0.22 +0.6
65,274 - GFF4657 0.22 +0.5
65,274 - GFF4657 0.22 -0.7
65,492 + GFF4657 0.62 -2.2
65,493 - GFF4657 0.62 +0.1
65,493 - GFF4657 0.62 +0.1
65,737 - -0.9
65,796 + -1.1
65,796 + -1.1
66,015 + -0.6
66,015 + -0.0
66,016 - +0.6
66,016 - +0.9
66,219 + GFF4658 0.25 +0.4
66,219 + GFF4658 0.25 -0.0
66,220 - GFF4658 0.25 -0.6
66,220 - GFF4658 0.25 +0.5
66,220 - GFF4658 0.25 -0.1
66,403 - GFF4658 0.39 -0.1
66,478 + GFF4658 0.45 +0.8
66,531 + GFF4658 0.49 +0.4
66,532 - GFF4658 0.49 -0.1
66,532 - GFF4658 0.49 +0.1
66,532 - GFF4658 0.49 +0.2
66,532 - GFF4658 0.49 -1.0
66,562 + GFF4658 0.52 -0.5
66,624 + GFF4658 0.57 +1.0
66,625 - GFF4658 0.57 +0.8
66,884 + GFF4658 0.77 -0.5
66,884 + GFF4658 0.77 +0.9
66,949 - GFF4658 0.82 -0.4
66,949 - GFF4658 0.82 -0.8
66,993 + GFF4658 0.85 +0.5
66,993 + GFF4658 0.85 -0.5
66,993 + GFF4658 0.85 +0.2
66,994 - GFF4658 0.85 +0.4
66,994 - GFF4658 0.85 +0.2
66,994 - GFF4658 0.85 -0.2
66,996 - GFF4658 0.85 +0.1
67,051 - GFF4658 0.90 -0.4
67,087 - -0.8
67,325 + +0.1
67,325 + +0.6
67,326 - -0.1
67,358 + -0.6
67,358 + -0.1
67,358 + -0.1
67,358 + +0.0
67,359 - -0.5
67,374 - +0.6
67,494 - GFF4659 0.17 +0.6
67,707 - GFF4659 0.39 -0.5
67,707 - GFF4659 0.39 +0.4
67,708 - GFF4659 0.39 -0.4
67,778 + GFF4659 0.46 -0.7
67,778 + GFF4659 0.46 +0.4
67,779 - GFF4659 0.47 -0.4
67,779 - GFF4659 0.47 -0.1
67,779 - GFF4659 0.47 +0.0
67,880 + GFF4659 0.57 -0.7
68,019 - GFF4659 0.71 -0.6
68,031 - GFF4659 0.72 +0.7
68,031 - GFF4659 0.72 +0.3
68,080 + GFF4659 0.77 -0.2
68,080 + GFF4659 0.77 +0.1
68,112 - GFF4659 0.81 -0.6

Or see this region's nucleotide sequence