Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF463 and GFF464 overlap by 4 nucleotides GFF464 and GFF465 are separated by 5 nucleotides GFF465 and GFF466 are separated by 0 nucleotides GFF466 and GFF467 are separated by 15 nucleotides
GFF463 - hypothetical protein, at 490,488 to 491,861
GFF463
GFF464 - Response regulator UvrY, at 491,858 to 492,490
GFF464
GFF465 - Putative aminoacrylate peracid reductase RutC, at 492,496 to 492,888
GFF465
GFF466 - hypothetical protein, at 492,889 to 493,734
GFF466
GFF467 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 493,750 to 494,463
GFF467
Position (kb) 492
493 Strain fitness (log2 ratio) -1
0
1 at 491.979 kb on - strand, within GFF464 at 492.161 kb on + strand, within GFF464 at 492.161 kb on + strand, within GFF464 at 492.162 kb on - strand, within GFF464 at 492.629 kb on + strand, within GFF465 at 492.630 kb on - strand, within GFF465 at 492.630 kb on - strand, within GFF465 at 492.794 kb on + strand, within GFF465 at 492.795 kb on - strand, within GFF465 at 493.221 kb on - strand, within GFF466 at 493.405 kb on + strand, within GFF466 at 493.405 kb on + strand, within GFF466 at 493.405 kb on + strand, within GFF466 at 493.405 kb on + strand, within GFF466 at 493.406 kb on - strand, within GFF466 at 493.406 kb on - strand, within GFF466 at 493.425 kb on - strand, within GFF466 at 493.425 kb on - strand, within GFF466 at 493.509 kb on - strand, within GFF466 at 493.655 kb on + strand at 493.656 kb on - strand at 493.656 kb on - strand at 493.656 kb on - strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.695 kb on - strand at 493.725 kb on + strand at 493.726 kb on - strand at 493.842 kb on - strand, within GFF467 at 493.842 kb on - strand, within GFF467
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 491,979 - GFF464 0.19 +0.3 492,161 + GFF464 0.48 +0.1 492,161 + GFF464 0.48 +0.1 492,162 - GFF464 0.48 -1.4 492,629 + GFF465 0.34 +0.7 492,630 - GFF465 0.34 +0.1 492,630 - GFF465 0.34 -1.3 492,794 + GFF465 0.76 -0.6 492,795 - GFF465 0.76 -1.0 493,221 - GFF466 0.39 -0.4 493,405 + GFF466 0.61 +0.4 493,405 + GFF466 0.61 +0.1 493,405 + GFF466 0.61 +0.7 493,405 + GFF466 0.61 -0.1 493,406 - GFF466 0.61 +0.4 493,406 - GFF466 0.61 +0.1 493,425 - GFF466 0.63 -1.6 493,425 - GFF466 0.63 -0.4 493,509 - GFF466 0.73 -0.4 493,655 + +0.5 493,656 - -0.2 493,656 - +0.8 493,656 - -0.6 493,694 + +0.0 493,694 + +0.9 493,695 - -1.0 493,725 + +1.0 493,726 - +0.6 493,842 - GFF467 0.13 +0.5 493,842 - GFF467 0.13 -1.1
Or see this region's nucleotide sequence