Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4630 and GFF4631 are separated by 47 nucleotides GFF4631 and GFF4632 are separated by 8 nucleotides GFF4632 and GFF4633 are separated by 121 nucleotides GFF4633 and GFF4634 are separated by 124 nucleotides
GFF4630 - Riboflavin transporter RfnT, at 39,154 to 40,239
GFF4630
GFF4631 - Gluconate 5-dehydrogenase, at 40,287 to 41,042
GFF4631
GFF4632 - Trk system potassium uptake protein TrkI, at 41,051 to 42,559
GFF4632
GFF4633 - Protein ApaG, at 42,681 to 43,073
GFF4633
GFF4634 - O-succinylhomoserine sulfhydrylase, at 43,198 to 44,418
GFF4634
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 40.749 kb on + strand, within GFF4631 at 40.750 kb on - strand, within GFF4631 at 40.989 kb on + strand at 40.989 kb on + strand at 40.990 kb on - strand at 41.026 kb on - strand at 41.026 kb on - strand at 41.301 kb on + strand, within GFF4632 at 41.301 kb on + strand, within GFF4632 at 41.302 kb on - strand, within GFF4632 at 41.302 kb on - strand, within GFF4632 at 41.392 kb on - strand, within GFF4632 at 41.535 kb on + strand, within GFF4632 at 41.687 kb on + strand, within GFF4632 at 41.740 kb on - strand, within GFF4632 at 41.740 kb on - strand, within GFF4632 at 41.787 kb on + strand, within GFF4632 at 41.787 kb on + strand, within GFF4632 at 41.788 kb on - strand, within GFF4632 at 41.788 kb on - strand, within GFF4632 at 41.788 kb on - strand, within GFF4632 at 41.908 kb on - strand, within GFF4632 at 41.908 kb on - strand, within GFF4632 at 41.940 kb on + strand, within GFF4632 at 41.940 kb on + strand, within GFF4632 at 41.941 kb on - strand, within GFF4632 at 41.941 kb on - strand, within GFF4632 at 41.941 kb on - strand, within GFF4632 at 41.941 kb on - strand, within GFF4632 at 42.113 kb on + strand, within GFF4632 at 42.114 kb on - strand, within GFF4632 at 42.114 kb on - strand, within GFF4632 at 42.620 kb on - strand at 42.634 kb on - strand at 42.772 kb on + strand, within GFF4633 at 42.772 kb on + strand, within GFF4633 at 42.773 kb on - strand, within GFF4633 at 42.773 kb on - strand, within GFF4633 at 42.974 kb on + strand, within GFF4633 at 42.976 kb on + strand, within GFF4633 at 43.024 kb on + strand, within GFF4633 at 43.050 kb on - strand at 43.073 kb on + strand at 43.073 kb on + strand at 43.073 kb on + strand at 43.074 kb on - strand at 43.083 kb on - strand at 43.083 kb on - strand at 43.521 kb on - strand, within GFF4634 at 43.521 kb on - strand, within GFF4634 at 43.521 kb on - strand, within GFF4634
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 40,749 + GFF4631 0.61 +0.1 40,750 - GFF4631 0.61 -1.3 40,989 + -0.4 40,989 + -0.4 40,990 - +0.1 41,026 - -1.8 41,026 - -0.3 41,301 + GFF4632 0.17 +1.0 41,301 + GFF4632 0.17 +0.8 41,302 - GFF4632 0.17 +0.1 41,302 - GFF4632 0.17 -0.0 41,392 - GFF4632 0.23 -0.3 41,535 + GFF4632 0.32 +0.3 41,687 + GFF4632 0.42 +0.4 41,740 - GFF4632 0.46 +0.3 41,740 - GFF4632 0.46 +0.5 41,787 + GFF4632 0.49 -0.5 41,787 + GFF4632 0.49 +0.1 41,788 - GFF4632 0.49 +0.8 41,788 - GFF4632 0.49 -0.7 41,788 - GFF4632 0.49 -0.9 41,908 - GFF4632 0.57 -0.1 41,908 - GFF4632 0.57 +0.7 41,940 + GFF4632 0.59 +0.4 41,940 + GFF4632 0.59 +0.2 41,941 - GFF4632 0.59 +0.3 41,941 - GFF4632 0.59 +0.2 41,941 - GFF4632 0.59 -1.4 41,941 - GFF4632 0.59 +0.1 42,113 + GFF4632 0.70 +1.1 42,114 - GFF4632 0.70 +1.2 42,114 - GFF4632 0.70 -0.6 42,620 - +0.1 42,634 - +0.2 42,772 + GFF4633 0.23 -0.0 42,772 + GFF4633 0.23 +0.2 42,773 - GFF4633 0.23 -0.3 42,773 - GFF4633 0.23 -0.1 42,974 + GFF4633 0.75 -0.2 42,976 + GFF4633 0.75 +0.2 43,024 + GFF4633 0.87 +0.8 43,050 - +0.8 43,073 + -0.4 43,073 + -0.2 43,073 + -0.5 43,074 - +0.0 43,083 - -0.9 43,083 - +0.4 43,521 - GFF4634 0.26 -1.6 43,521 - GFF4634 0.26 -0.7 43,521 - GFF4634 0.26 -1.7
Or see this region's nucleotide sequence