Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4603 and GFF4604 overlap by 4 nucleotides GFF4604 and GFF4605 are separated by 137 nucleotides GFF4605 and GFF4606 are separated by 56 nucleotides
GFF4603 - Bicarbonate transport ATP-binding protein CmpD, at 11,378 to 12,205
GFF4603
GFF4604 - Putative aliphatic sulfonates transport permease protein SsuC, at 12,202 to 12,963
GFF4604
GFF4605 - hypothetical protein, at 13,101 to 14,096
GFF4605
GFF4606 - Benzaldehyde dehydrogenase YfmT, at 14,153 to 15,628
GFF4606
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1
2 at 12.221 kb on + strand at 12.222 kb on - strand at 12.296 kb on + strand, within GFF4604 at 12.296 kb on + strand, within GFF4604 at 12.296 kb on + strand, within GFF4604 at 12.297 kb on - strand, within GFF4604 at 12.569 kb on + strand, within GFF4604 at 12.659 kb on + strand, within GFF4604 at 12.660 kb on - strand, within GFF4604 at 12.660 kb on - strand, within GFF4604 at 12.707 kb on + strand, within GFF4604 at 12.707 kb on + strand, within GFF4604 at 12.708 kb on - strand, within GFF4604 at 12.708 kb on - strand, within GFF4604 at 12.708 kb on - strand, within GFF4604 at 12.777 kb on - strand, within GFF4604 at 12.895 kb on + strand at 12.895 kb on + strand at 12.895 kb on + strand at 12.896 kb on - strand at 13.255 kb on + strand, within GFF4605 at 13.256 kb on - strand, within GFF4605 at 13.351 kb on + strand, within GFF4605 at 13.352 kb on - strand, within GFF4605 at 13.475 kb on - strand, within GFF4605 at 13.520 kb on - strand, within GFF4605 at 13.520 kb on - strand, within GFF4605 at 13.520 kb on - strand, within GFF4605 at 13.528 kb on + strand, within GFF4605 at 13.528 kb on + strand, within GFF4605 at 13.528 kb on + strand, within GFF4605 at 13.529 kb on - strand, within GFF4605 at 13.529 kb on - strand, within GFF4605 at 13.529 kb on - strand, within GFF4605 at 13.529 kb on - strand, within GFF4605 at 13.639 kb on + strand, within GFF4605 at 13.640 kb on - strand, within GFF4605 at 13.676 kb on - strand, within GFF4605 at 13.684 kb on + strand, within GFF4605 at 13.921 kb on + strand, within GFF4605 at 13.921 kb on + strand, within GFF4605 at 13.922 kb on - strand, within GFF4605 at 13.922 kb on - strand, within GFF4605 at 13.948 kb on - strand, within GFF4605 at 13.948 kb on - strand, within GFF4605 at 13.948 kb on - strand, within GFF4605 at 13.948 kb on - strand, within GFF4605 at 14.051 kb on + strand at 14.052 kb on - strand at 14.392 kb on - strand, within GFF4606 at 14.392 kb on - strand, within GFF4606 at 14.478 kb on + strand, within GFF4606 at 14.478 kb on + strand, within GFF4606 at 14.479 kb on - strand, within GFF4606 at 14.664 kb on - strand, within GFF4606 at 14.774 kb on + strand, within GFF4606 at 14.803 kb on - strand, within GFF4606
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 12,221 + +0.2 12,222 - +0.5 12,296 + GFF4604 0.12 +1.8 12,296 + GFF4604 0.12 -0.7 12,296 + GFF4604 0.12 +0.3 12,297 - GFF4604 0.12 -1.3 12,569 + GFF4604 0.48 +0.1 12,659 + GFF4604 0.60 -0.2 12,660 - GFF4604 0.60 -0.3 12,660 - GFF4604 0.60 -0.6 12,707 + GFF4604 0.66 -1.3 12,707 + GFF4604 0.66 -0.1 12,708 - GFF4604 0.66 -0.9 12,708 - GFF4604 0.66 -0.1 12,708 - GFF4604 0.66 -0.3 12,777 - GFF4604 0.75 -0.4 12,895 + +0.0 12,895 + +0.5 12,895 + -0.3 12,896 - +0.8 13,255 + GFF4605 0.15 -0.3 13,256 - GFF4605 0.16 +0.8 13,351 + GFF4605 0.25 -0.5 13,352 - GFF4605 0.25 +0.3 13,475 - GFF4605 0.38 -0.2 13,520 - GFF4605 0.42 -0.1 13,520 - GFF4605 0.42 -0.4 13,520 - GFF4605 0.42 +1.3 13,528 + GFF4605 0.43 +0.7 13,528 + GFF4605 0.43 -0.3 13,528 + GFF4605 0.43 -0.7 13,529 - GFF4605 0.43 -0.3 13,529 - GFF4605 0.43 +0.2 13,529 - GFF4605 0.43 +0.5 13,529 - GFF4605 0.43 -1.7 13,639 + GFF4605 0.54 +0.9 13,640 - GFF4605 0.54 -0.6 13,676 - GFF4605 0.58 -1.2 13,684 + GFF4605 0.59 -1.6 13,921 + GFF4605 0.82 -0.2 13,921 + GFF4605 0.82 +0.1 13,922 - GFF4605 0.82 +0.6 13,922 - GFF4605 0.82 +0.0 13,948 - GFF4605 0.85 -1.3 13,948 - GFF4605 0.85 +0.6 13,948 - GFF4605 0.85 -1.1 13,948 - GFF4605 0.85 +0.5 14,051 + +0.1 14,052 - +0.5 14,392 - GFF4606 0.16 -0.2 14,392 - GFF4606 0.16 -0.5 14,478 + GFF4606 0.22 +1.1 14,478 + GFF4606 0.22 +1.0 14,479 - GFF4606 0.22 -0.3 14,664 - GFF4606 0.35 -0.1 14,774 + GFF4606 0.42 +0.3 14,803 - GFF4606 0.44 -1.5
Or see this region's nucleotide sequence