Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4594 and GFF4595 overlap by 4 nucleotides GFF4595 and GFF4596 overlap by 4 nucleotides GFF4596 and GFF4597 are separated by 10 nucleotides GFF4597 and GFF4598 are separated by 106 nucleotides
GFF4594 - Riboflavin transport system permease protein RibX, at 3,079 to 3,852
GFF4594
GFF4595 - Aliphatic sulfonates import ATP-binding protein SsuB, at 3,849 to 4,676
GFF4595
GFF4596 - Allantoinase, at 4,673 to 6,109
GFF4596
GFF4597 - 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX, at 6,120 to 6,911
GFF4597
GFF4598 - Riboflavin-binding protein RibY, at 7,018 to 8,073
GFF4598
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -1
0
1
2
3 at 3.845 kb on + strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.846 kb on - strand at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.940 kb on + strand, within GFF4595 at 3.949 kb on + strand, within GFF4595 at 4.624 kb on + strand at 4.624 kb on + strand at 4.624 kb on + strand at 4.625 kb on - strand at 4.625 kb on - strand at 4.727 kb on - strand at 4.727 kb on - strand at 4.840 kb on + strand, within GFF4596 at 4.841 kb on - strand, within GFF4596 at 4.841 kb on - strand, within GFF4596 at 5.037 kb on + strand, within GFF4596 at 5.037 kb on + strand, within GFF4596 at 5.037 kb on + strand, within GFF4596 at 5.038 kb on - strand, within GFF4596 at 5.038 kb on - strand, within GFF4596 at 5.038 kb on - strand, within GFF4596 at 5.052 kb on + strand, within GFF4596 at 5.052 kb on + strand, within GFF4596 at 5.283 kb on + strand, within GFF4596 at 5.284 kb on - strand, within GFF4596 at 5.307 kb on + strand, within GFF4596 at 5.307 kb on + strand, within GFF4596 at 5.308 kb on - strand, within GFF4596 at 5.659 kb on - strand, within GFF4596 at 5.659 kb on - strand, within GFF4596 at 5.665 kb on - strand, within GFF4596 at 5.733 kb on + strand, within GFF4596 at 5.733 kb on + strand, within GFF4596 at 5.733 kb on + strand, within GFF4596 at 5.734 kb on - strand, within GFF4596 at 5.751 kb on + strand, within GFF4596 at 5.898 kb on + strand, within GFF4596 at 5.898 kb on + strand, within GFF4596 at 5.899 kb on - strand, within GFF4596 at 6.177 kb on + strand at 6.244 kb on + strand, within GFF4597 at 6.244 kb on + strand, within GFF4597 at 6.245 kb on - strand, within GFF4597 at 6.439 kb on + strand, within GFF4597 at 6.440 kb on - strand, within GFF4597 at 6.440 kb on - strand, within GFF4597
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 3,845 + +0.9 3,846 - -1.2 3,846 - +1.3 3,846 - +0.6 3,846 - -0.5 3,846 - -1.3 3,846 - -1.4 3,940 + GFF4595 0.11 +0.3 3,940 + GFF4595 0.11 -1.3 3,940 + GFF4595 0.11 +1.1 3,940 + GFF4595 0.11 -0.5 3,940 + GFF4595 0.11 +0.4 3,940 + GFF4595 0.11 -0.5 3,949 + GFF4595 0.12 +0.6 4,624 + -1.0 4,624 + +0.5 4,624 + -0.0 4,625 - -0.4 4,625 - +0.1 4,727 - +0.2 4,727 - -0.0 4,840 + GFF4596 0.12 +0.1 4,841 - GFF4596 0.12 -0.1 4,841 - GFF4596 0.12 -0.3 5,037 + GFF4596 0.25 -0.3 5,037 + GFF4596 0.25 -0.5 5,037 + GFF4596 0.25 +0.0 5,038 - GFF4596 0.25 +3.0 5,038 - GFF4596 0.25 +0.5 5,038 - GFF4596 0.25 -0.2 5,052 + GFF4596 0.26 +0.5 5,052 + GFF4596 0.26 -1.1 5,283 + GFF4596 0.42 -0.4 5,284 - GFF4596 0.43 -0.5 5,307 + GFF4596 0.44 -0.2 5,307 + GFF4596 0.44 +0.2 5,308 - GFF4596 0.44 -0.6 5,659 - GFF4596 0.69 -0.0 5,659 - GFF4596 0.69 -1.3 5,665 - GFF4596 0.69 +0.4 5,733 + GFF4596 0.74 +1.1 5,733 + GFF4596 0.74 -0.4 5,733 + GFF4596 0.74 -0.6 5,734 - GFF4596 0.74 -0.9 5,751 + GFF4596 0.75 +1.9 5,898 + GFF4596 0.85 +0.1 5,898 + GFF4596 0.85 -0.1 5,899 - GFF4596 0.85 -0.8 6,177 + -1.0 6,244 + GFF4597 0.16 -0.4 6,244 + GFF4597 0.16 +1.2 6,245 - GFF4597 0.16 -0.9 6,439 + GFF4597 0.40 +0.6 6,440 - GFF4597 0.40 +0.4 6,440 - GFF4597 0.40 +0.1
Or see this region's nucleotide sequence