Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4548 and GFF4549 are separated by 240 nucleotides GFF4549 and GFF4550 are separated by 150 nucleotides GFF4550 and GFF4551 are separated by 41 nucleotides
GFF4548 - NADPH dehydrogenase, at 128,433 to 129,908
GFF4548
GFF4549 - hypothetical protein, at 130,149 to 131,840
GFF4549
GFF4550 - HTH-type transcriptional repressor NicS, at 131,991 to 132,674
GFF4550
GFF4551 - Caffeate CoA-transferase, at 132,716 to 134,320
GFF4551
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 129.272 kb on - strand, within GFF4548 at 129.356 kb on - strand, within GFF4548 at 129.400 kb on + strand, within GFF4548 at 129.629 kb on - strand, within GFF4548 at 129.629 kb on - strand, within GFF4548 at 129.629 kb on - strand, within GFF4548 at 129.883 kb on - strand at 129.901 kb on + strand at 130.044 kb on - strand at 130.066 kb on - strand at 130.066 kb on - strand at 130.132 kb on + strand at 130.133 kb on - strand at 130.133 kb on - strand at 130.133 kb on - strand at 130.133 kb on - strand at 130.137 kb on - strand at 130.150 kb on + strand at 130.150 kb on + strand at 130.163 kb on + strand at 130.259 kb on - strand at 130.326 kb on - strand, within GFF4549 at 130.390 kb on + strand, within GFF4549 at 130.449 kb on - strand, within GFF4549 at 130.456 kb on - strand, within GFF4549 at 130.482 kb on - strand, within GFF4549 at 130.582 kb on - strand, within GFF4549 at 130.619 kb on + strand, within GFF4549 at 130.942 kb on - strand, within GFF4549 at 131.023 kb on - strand, within GFF4549 at 131.080 kb on - strand, within GFF4549 at 131.227 kb on - strand, within GFF4549 at 131.297 kb on + strand, within GFF4549 at 131.297 kb on + strand, within GFF4549 at 131.359 kb on + strand, within GFF4549 at 131.517 kb on - strand, within GFF4549 at 131.697 kb on - strand at 131.756 kb on - strand at 131.855 kb on + strand at 131.855 kb on + strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.872 kb on + strand at 131.872 kb on + strand at 131.872 kb on + strand at 131.872 kb on + strand at 131.897 kb on + strand at 131.897 kb on + strand at 131.897 kb on + strand at 131.898 kb on - strand at 131.898 kb on - strand at 131.898 kb on - strand at 131.898 kb on - strand at 131.904 kb on + strand at 131.904 kb on + strand at 131.904 kb on + strand at 131.905 kb on - strand at 131.918 kb on - strand at 131.918 kb on - strand at 131.918 kb on - strand at 132.005 kb on + strand at 132.006 kb on - strand at 132.007 kb on + strand at 132.008 kb on - strand at 132.008 kb on - strand at 132.008 kb on - strand at 132.112 kb on + strand, within GFF4550 at 132.112 kb on + strand, within GFF4550 at 132.113 kb on - strand, within GFF4550 at 132.118 kb on + strand, within GFF4550 at 132.119 kb on - strand, within GFF4550 at 132.119 kb on - strand, within GFF4550 at 132.142 kb on + strand, within GFF4550 at 132.142 kb on + strand, within GFF4550 at 132.143 kb on - strand, within GFF4550 at 132.266 kb on - strand, within GFF4550 at 132.421 kb on + strand, within GFF4550 at 132.422 kb on - strand, within GFF4550 at 132.422 kb on - strand, within GFF4550 at 132.422 kb on - strand, within GFF4550 at 132.446 kb on - strand, within GFF4550 at 132.475 kb on + strand, within GFF4550 at 132.475 kb on + strand, within GFF4550 at 132.475 kb on + strand, within GFF4550 at 132.475 kb on + strand, within GFF4550 at 132.476 kb on - strand, within GFF4550 at 132.476 kb on - strand, within GFF4550 at 132.476 kb on - strand, within GFF4550 at 132.578 kb on + strand, within GFF4550
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 129,272 - GFF4548 0.57 +0.5 129,356 - GFF4548 0.63 -1.6 129,400 + GFF4548 0.66 -0.0 129,629 - GFF4548 0.81 +0.3 129,629 - GFF4548 0.81 +1.3 129,629 - GFF4548 0.81 -0.1 129,883 - +0.4 129,901 + +0.5 130,044 - -0.3 130,066 - +1.8 130,066 - +0.3 130,132 + -0.8 130,133 - +0.4 130,133 - -0.1 130,133 - -0.8 130,133 - -0.6 130,137 - +0.0 130,150 + -1.4 130,150 + +0.3 130,163 + -0.6 130,259 - -0.9 130,326 - GFF4549 0.10 +0.9 130,390 + GFF4549 0.14 -0.4 130,449 - GFF4549 0.18 -1.0 130,456 - GFF4549 0.18 -0.6 130,482 - GFF4549 0.20 -1.2 130,582 - GFF4549 0.26 +0.9 130,619 + GFF4549 0.28 +0.3 130,942 - GFF4549 0.47 +1.1 131,023 - GFF4549 0.52 +0.3 131,080 - GFF4549 0.55 +0.4 131,227 - GFF4549 0.64 +1.0 131,297 + GFF4549 0.68 +0.1 131,297 + GFF4549 0.68 -0.2 131,359 + GFF4549 0.72 -0.9 131,517 - GFF4549 0.81 -0.4 131,697 - +0.6 131,756 - +0.1 131,855 + -0.1 131,855 + -1.4 131,858 - +0.0 131,858 - +0.1 131,858 - -0.2 131,858 - +0.4 131,858 - +0.6 131,872 + -3.1 131,872 + +0.2 131,872 + +0.3 131,872 + +0.3 131,897 + +0.5 131,897 + -0.4 131,897 + -0.2 131,898 - +1.4 131,898 - -0.6 131,898 - +0.4 131,898 - -0.7 131,904 + -1.0 131,904 + +0.4 131,904 + -0.3 131,905 - -1.3 131,918 - +0.6 131,918 - +0.8 131,918 - +0.3 132,005 + +1.3 132,006 - -0.3 132,007 + -0.7 132,008 - -0.3 132,008 - +1.3 132,008 - -0.1 132,112 + GFF4550 0.18 -2.9 132,112 + GFF4550 0.18 -1.0 132,113 - GFF4550 0.18 -1.3 132,118 + GFF4550 0.19 -1.7 132,119 - GFF4550 0.19 -0.6 132,119 - GFF4550 0.19 -1.3 132,142 + GFF4550 0.22 -0.6 132,142 + GFF4550 0.22 -0.1 132,143 - GFF4550 0.22 +0.0 132,266 - GFF4550 0.40 +1.0 132,421 + GFF4550 0.63 +0.4 132,422 - GFF4550 0.63 -0.1 132,422 - GFF4550 0.63 -0.6 132,422 - GFF4550 0.63 -0.1 132,446 - GFF4550 0.67 +0.7 132,475 + GFF4550 0.71 +0.0 132,475 + GFF4550 0.71 -0.0 132,475 + GFF4550 0.71 +0.4 132,475 + GFF4550 0.71 -0.1 132,476 - GFF4550 0.71 -2.2 132,476 - GFF4550 0.71 +0.8 132,476 - GFF4550 0.71 +0.2 132,578 + GFF4550 0.86 -0.7
Or see this region's nucleotide sequence