Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4523 and GFF4524 are separated by 65 nucleotides GFF4524 and GFF4525 overlap by 11 nucleotides GFF4525 and GFF4526 are separated by 222 nucleotides GFF4526 and GFF4527 overlap by 14 nucleotides
GFF4523 - hypothetical protein, at 96,868 to 98,544
GFF4523
GFF4524 - Regulator of RpoS, at 98,610 to 99,425
GFF4524
GFF4525 - Regulator of RpoS, at 99,415 to 100,710
GFF4525
GFF4526 - Sporulation initiation phosphotransferase F, at 100,933 to 101,316
GFF4526
GFF4527 - Adaptive-response sensory-kinase SasA, at 101,303 to 103,384
GFF4527
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 98.903 kb on + strand, within GFF4524 at 98.904 kb on - strand, within GFF4524 at 98.944 kb on + strand, within GFF4524 at 99.236 kb on + strand, within GFF4524 at 99.426 kb on + strand at 99.426 kb on + strand at 99.427 kb on - strand at 99.427 kb on - strand at 99.427 kb on - strand at 99.551 kb on + strand, within GFF4525 at 99.857 kb on + strand, within GFF4525 at 99.857 kb on + strand, within GFF4525 at 99.858 kb on - strand, within GFF4525 at 99.858 kb on - strand, within GFF4525 at 100.414 kb on + strand, within GFF4525 at 100.414 kb on + strand, within GFF4525 at 100.414 kb on + strand, within GFF4525 at 100.415 kb on - strand, within GFF4525 at 100.415 kb on - strand, within GFF4525 at 100.415 kb on - strand, within GFF4525 at 100.572 kb on + strand, within GFF4525 at 100.572 kb on + strand, within GFF4525 at 100.573 kb on - strand, within GFF4525 at 100.573 kb on - strand, within GFF4525 at 100.573 kb on - strand, within GFF4525 at 100.573 kb on - strand, within GFF4525 at 100.743 kb on - strand at 100.774 kb on + strand at 100.919 kb on - strand at 100.970 kb on - strand at 100.970 kb on - strand at 101.089 kb on + strand, within GFF4526 at 101.092 kb on - strand, within GFF4526 at 101.092 kb on - strand, within GFF4526 at 101.577 kb on - strand, within GFF4527 at 101.585 kb on + strand, within GFF4527 at 101.585 kb on + strand, within GFF4527 at 101.586 kb on - strand, within GFF4527
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 98,903 + GFF4524 0.36 -1.9 98,904 - GFF4524 0.36 -2.5 98,944 + GFF4524 0.41 -1.1 99,236 + GFF4524 0.77 -3.1 99,426 + -1.5 99,426 + -1.7 99,427 - +1.8 99,427 - +2.0 99,427 - +0.6 99,551 + GFF4525 0.10 -0.9 99,857 + GFF4525 0.34 -0.5 99,857 + GFF4525 0.34 -0.9 99,858 - GFF4525 0.34 +0.4 99,858 - GFF4525 0.34 +1.1 100,414 + GFF4525 0.77 -0.1 100,414 + GFF4525 0.77 -0.8 100,414 + GFF4525 0.77 -1.0 100,415 - GFF4525 0.77 +0.3 100,415 - GFF4525 0.77 +1.2 100,415 - GFF4525 0.77 +0.7 100,572 + GFF4525 0.89 -3.6 100,572 + GFF4525 0.89 -1.0 100,573 - GFF4525 0.89 -0.1 100,573 - GFF4525 0.89 +1.4 100,573 - GFF4525 0.89 +0.9 100,573 - GFF4525 0.89 +0.1 100,743 - +0.7 100,774 + -0.2 100,919 - +0.2 100,970 - -0.6 100,970 - +1.2 101,089 + GFF4526 0.41 -0.3 101,092 - GFF4526 0.41 -0.7 101,092 - GFF4526 0.41 -0.5 101,577 - GFF4527 0.13 +0.9 101,585 + GFF4527 0.14 -2.3 101,585 + GFF4527 0.14 -1.7 101,586 - GFF4527 0.14 -1.4
Or see this region's nucleotide sequence