Strain Fitness in Xanthobacter sp. DMC5 around GFF452

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF451 and GFF452 overlap by 1 nucleotidesGFF452 and GFF453 are separated by 252 nucleotidesGFF453 and GFF454 overlap by 11 nucleotides GFF451 - Beta-barrel assembly-enhancing protease, at 473,951 to 476,056 GFF451 GFF452 - hypothetical protein, at 476,056 to 481,188 GFF452 GFF453 - Transcriptional regulatory protein tctD, at 481,441 to 482,109 GFF453 GFF454 - Sensor protein QseC, at 482,099 to 483,481 GFF454 Position (kb) 476 477 478 479 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2at 475.278 kb on + strand, within GFF451at 475.278 kb on + strand, within GFF451at 475.279 kb on - strand, within GFF451at 475.279 kb on - strand, within GFF451at 475.384 kb on + strand, within GFF451at 475.384 kb on + strand, within GFF451at 475.385 kb on - strand, within GFF451at 475.385 kb on - strand, within GFF451at 475.386 kb on + strand, within GFF451at 475.386 kb on + strand, within GFF451at 475.398 kb on + strand, within GFF451at 475.399 kb on - strand, within GFF451at 475.705 kb on - strand, within GFF451at 475.797 kb on + strand, within GFF451at 475.797 kb on + strand, within GFF451at 475.797 kb on + strand, within GFF451at 475.798 kb on - strand, within GFF451at 475.798 kb on - strand, within GFF451at 475.990 kb on - strandat 476.099 kb on + strandat 476.099 kb on + strandat 476.100 kb on - strandat 476.274 kb on - strandat 476.395 kb on + strandat 476.450 kb on + strandat 476.465 kb on + strandat 476.465 kb on + strandat 476.492 kb on + strandat 476.493 kb on - strandat 476.498 kb on + strandat 476.499 kb on - strandat 476.499 kb on - strandat 476.499 kb on - strandat 476.576 kb on + strand, within GFF452at 476.600 kb on + strand, within GFF452at 476.609 kb on + strand, within GFF452at 476.615 kb on + strand, within GFF452at 476.615 kb on + strand, within GFF452at 476.615 kb on + strand, within GFF452at 476.616 kb on - strand, within GFF452at 476.636 kb on + strand, within GFF452at 476.637 kb on - strand, within GFF452at 476.663 kb on + strand, within GFF452at 476.664 kb on - strand, within GFF452at 476.834 kb on + strand, within GFF452at 476.834 kb on + strand, within GFF452at 476.834 kb on + strand, within GFF452at 476.835 kb on - strand, within GFF452at 476.952 kb on - strand, within GFF452at 476.987 kb on + strand, within GFF452at 477.167 kb on + strand, within GFF452at 477.167 kb on + strand, within GFF452at 477.167 kb on + strand, within GFF452at 477.167 kb on + strand, within GFF452at 477.168 kb on - strand, within GFF452at 477.168 kb on - strand, within GFF452at 477.218 kb on + strand, within GFF452at 477.324 kb on - strand, within GFF452at 477.324 kb on - strand, within GFF452at 477.324 kb on - strand, within GFF452at 477.324 kb on - strand, within GFF452at 477.408 kb on - strand, within GFF452at 477.408 kb on - strand, within GFF452at 477.515 kb on + strand, within GFF452at 477.515 kb on + strand, within GFF452at 477.516 kb on - strand, within GFF452at 477.549 kb on - strand, within GFF452at 477.549 kb on - strand, within GFF452at 477.549 kb on - strand, within GFF452at 477.727 kb on + strand, within GFF452at 477.728 kb on - strand, within GFF452at 477.815 kb on + strand, within GFF452at 477.843 kb on - strand, within GFF452at 478.341 kb on + strand, within GFF452at 478.459 kb on - strand, within GFF452at 478.459 kb on - strand, within GFF452at 478.908 kb on + strand, within GFF452at 478.908 kb on + strand, within GFF452at 479.108 kb on + strand, within GFF452at 479.117 kb on + strand, within GFF452at 479.118 kb on - strand, within GFF452at 479.236 kb on + strand, within GFF452at 479.237 kb on - strand, within GFF452at 479.429 kb on + strand, within GFF452at 479.430 kb on - strand, within GFF452at 479.430 kb on - strand, within GFF452at 479.430 kb on - strand, within GFF452at 479.430 kb on - strand, within GFF452at 479.430 kb on - strand, within GFF452at 479.492 kb on + strand, within GFF452at 479.558 kb on + strand, within GFF452at 479.558 kb on + strand, within GFF452at 479.559 kb on - strand, within GFF452at 479.666 kb on + strand, within GFF452at 479.667 kb on - strand, within GFF452at 479.720 kb on + strand, within GFF452at 479.720 kb on + strand, within GFF452at 479.720 kb on + strand, within GFF452at 480.033 kb on - strand, within GFF452at 480.033 kb on - strand, within GFF452at 480.033 kb on - strand, within GFF452at 480.033 kb on - strand, within GFF452at 480.033 kb on - strand, within GFF452at 480.098 kb on + strand, within GFF452at 480.098 kb on + strand, within GFF452at 480.099 kb on - strand, within GFF452at 480.122 kb on + strand, within GFF452at 480.122 kb on + strand, within GFF452at 480.123 kb on - strand, within GFF452at 480.589 kb on - strand, within GFF452at 480.589 kb on - strand, within GFF452at 480.589 kb on - strand, within GFF452at 480.609 kb on - strand, within GFF452at 480.704 kb on + strandat 480.708 kb on - strandat 480.831 kb on - strandat 480.918 kb on + strandat 481.100 kb on + strandat 481.101 kb on - strandat 481.101 kb on - strandat 481.101 kb on - strandat 481.101 kb on - strandat 481.275 kb on - strandat 481.335 kb on - strandat 481.574 kb on - strand, within GFF453at 481.732 kb on + strand, within GFF453at 482.017 kb on + strand, within GFF453at 482.017 kb on + strand, within GFF453at 482.017 kb on + strand, within GFF453at 482.017 kb on + strand, within GFF453at 482.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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475,278 + GFF451 0.63 +0.1
475,278 + GFF451 0.63 -1.6
475,279 - GFF451 0.63 -1.1
475,279 - GFF451 0.63 -0.4
475,384 + GFF451 0.68 +0.2
475,384 + GFF451 0.68 -0.5
475,385 - GFF451 0.68 -1.2
475,385 - GFF451 0.68 -0.1
475,386 + GFF451 0.68 +0.6
475,386 + GFF451 0.68 -0.9
475,398 + GFF451 0.69 -0.7
475,399 - GFF451 0.69 +0.3
475,705 - GFF451 0.83 +0.1
475,797 + GFF451 0.88 -0.0
475,797 + GFF451 0.88 -0.1
475,797 + GFF451 0.88 +0.5
475,798 - GFF451 0.88 +0.3
475,798 - GFF451 0.88 +0.6
475,990 - -0.3
476,099 + +0.6
476,099 + -0.9
476,100 - +0.7
476,274 - +0.8
476,395 + +0.6
476,450 + +0.2
476,465 + -0.1
476,465 + +1.5
476,492 + +0.1
476,493 - -2.5
476,498 + +0.5
476,499 - +0.4
476,499 - -1.0
476,499 - -1.7
476,576 + GFF452 0.10 +0.2
476,600 + GFF452 0.11 -0.2
476,609 + GFF452 0.11 -0.2
476,615 + GFF452 0.11 -0.1
476,615 + GFF452 0.11 +0.4
476,615 + GFF452 0.11 +0.7
476,616 - GFF452 0.11 -0.4
476,636 + GFF452 0.11 +0.2
476,637 - GFF452 0.11 +0.2
476,663 + GFF452 0.12 -0.3
476,664 - GFF452 0.12 +0.9
476,834 + GFF452 0.15 -1.4
476,834 + GFF452 0.15 +0.3
476,834 + GFF452 0.15 +0.3
476,835 - GFF452 0.15 -1.8
476,952 - GFF452 0.17 +0.1
476,987 + GFF452 0.18 -1.6
477,167 + GFF452 0.22 -1.1
477,167 + GFF452 0.22 -0.7
477,167 + GFF452 0.22 -0.8
477,167 + GFF452 0.22 +0.9
477,168 - GFF452 0.22 +0.6
477,168 - GFF452 0.22 +0.5
477,218 + GFF452 0.23 -0.2
477,324 - GFF452 0.25 +2.1
477,324 - GFF452 0.25 +0.2
477,324 - GFF452 0.25 +1.3
477,324 - GFF452 0.25 +2.1
477,408 - GFF452 0.26 +1.3
477,408 - GFF452 0.26 +0.8
477,515 + GFF452 0.28 -0.1
477,515 + GFF452 0.28 +0.5
477,516 - GFF452 0.28 +0.0
477,549 - GFF452 0.29 +0.0
477,549 - GFF452 0.29 -0.6
477,549 - GFF452 0.29 +0.4
477,727 + GFF452 0.33 +0.2
477,728 - GFF452 0.33 +0.2
477,815 + GFF452 0.34 +0.7
477,843 - GFF452 0.35 -1.0
478,341 + GFF452 0.45 -0.0
478,459 - GFF452 0.47 -0.1
478,459 - GFF452 0.47 +1.6
478,908 + GFF452 0.56 +1.4
478,908 + GFF452 0.56 +0.4
479,108 + GFF452 0.59 -1.8
479,117 + GFF452 0.60 +0.0
479,118 - GFF452 0.60 +0.3
479,236 + GFF452 0.62 -0.6
479,237 - GFF452 0.62 -0.5
479,429 + GFF452 0.66 -0.3
479,430 - GFF452 0.66 +0.1
479,430 - GFF452 0.66 +0.7
479,430 - GFF452 0.66 +1.3
479,430 - GFF452 0.66 +1.9
479,430 - GFF452 0.66 +0.7
479,492 + GFF452 0.67 +0.1
479,558 + GFF452 0.68 -0.4
479,558 + GFF452 0.68 -0.4
479,559 - GFF452 0.68 -0.1
479,666 + GFF452 0.70 +0.5
479,667 - GFF452 0.70 +0.2
479,720 + GFF452 0.71 -0.7
479,720 + GFF452 0.71 -0.2
479,720 + GFF452 0.71 +1.2
480,033 - GFF452 0.77 +0.1
480,033 - GFF452 0.77 +0.0
480,033 - GFF452 0.77 +0.3
480,033 - GFF452 0.77 +0.6
480,033 - GFF452 0.77 +0.5
480,098 + GFF452 0.79 +0.3
480,098 + GFF452 0.79 -0.2
480,099 - GFF452 0.79 -0.6
480,122 + GFF452 0.79 +0.0
480,122 + GFF452 0.79 -0.3
480,123 - GFF452 0.79 +0.7
480,589 - GFF452 0.88 +0.0
480,589 - GFF452 0.88 +0.5
480,589 - GFF452 0.88 +0.0
480,609 - GFF452 0.89 +0.3
480,704 + -0.0
480,708 - +0.5
480,831 - +0.5
480,918 + -0.0
481,100 + +0.2
481,101 - +0.6
481,101 - -0.4
481,101 - -0.0
481,101 - -0.7
481,275 - +0.4
481,335 - -0.8
481,574 - GFF453 0.20 +1.1
481,732 + GFF453 0.43 -2.6
482,017 + GFF453 0.86 +0.0
482,017 + GFF453 0.86 -0.3
482,017 + GFF453 0.86 -0.2
482,017 + GFF453 0.86 -0.1
482,087 - +0.2

Or see this region's nucleotide sequence