Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4500 and GFF4501 are separated by 443 nucleotides GFF4501 and GFF4502 are separated by 1 nucleotides GFF4502 and GFF4503 overlap by 4 nucleotides
GFF4500 - Motility protein A, at 75,664 to 76,551
GFF4500
GFF4501 - hypothetical protein, at 76,995 to 77,759
GFF4501
GFF4502 - Flagellar basal-body rod protein FlgG, at 77,761 to 78,483
GFF4502
GFF4503 - putative secretion system apparatus ATP synthase SsaN, at 78,480 to 79,832
GFF4503
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 76.024 kb on - strand, within GFF4500 at 76.024 kb on - strand, within GFF4500 at 76.166 kb on + strand, within GFF4500 at 76.178 kb on + strand, within GFF4500 at 76.178 kb on + strand, within GFF4500 at 76.178 kb on + strand, within GFF4500 at 76.179 kb on - strand, within GFF4500 at 76.179 kb on - strand, within GFF4500 at 76.212 kb on + strand, within GFF4500 at 76.305 kb on - strand, within GFF4500 at 76.451 kb on + strand, within GFF4500 at 76.451 kb on + strand, within GFF4500 at 76.584 kb on - strand at 76.612 kb on + strand at 76.612 kb on + strand at 76.612 kb on + strand at 76.613 kb on - strand at 76.647 kb on + strand at 77.016 kb on + strand at 77.016 kb on + strand at 77.017 kb on - strand at 77.094 kb on + strand, within GFF4501 at 77.097 kb on + strand, within GFF4501 at 77.097 kb on + strand, within GFF4501 at 77.163 kb on + strand, within GFF4501 at 77.164 kb on - strand, within GFF4501 at 77.199 kb on + strand, within GFF4501 at 77.200 kb on - strand, within GFF4501 at 77.211 kb on + strand, within GFF4501 at 77.211 kb on + strand, within GFF4501 at 77.212 kb on - strand, within GFF4501 at 77.374 kb on - strand, within GFF4501 at 77.374 kb on - strand, within GFF4501 at 77.374 kb on - strand, within GFF4501 at 77.472 kb on + strand, within GFF4501 at 77.520 kb on + strand, within GFF4501 at 77.520 kb on + strand, within GFF4501 at 77.520 kb on + strand, within GFF4501 at 77.520 kb on + strand, within GFF4501 at 77.521 kb on - strand, within GFF4501 at 77.521 kb on - strand, within GFF4501 at 77.749 kb on - strand at 77.749 kb on - strand at 77.777 kb on - strand at 77.777 kb on - strand at 77.944 kb on + strand, within GFF4502 at 77.945 kb on - strand, within GFF4502 at 78.049 kb on + strand, within GFF4502 at 78.049 kb on + strand, within GFF4502 at 78.050 kb on - strand, within GFF4502 at 78.072 kb on + strand, within GFF4502 at 78.072 kb on + strand, within GFF4502 at 78.072 kb on + strand, within GFF4502 at 78.072 kb on + strand, within GFF4502 at 78.072 kb on + strand, within GFF4502 at 78.072 kb on + strand, within GFF4502 at 78.073 kb on - strand, within GFF4502 at 78.073 kb on - strand, within GFF4502 at 78.313 kb on + strand, within GFF4502 at 78.313 kb on + strand, within GFF4502 at 78.314 kb on - strand, within GFF4502 at 78.589 kb on + strand at 78.590 kb on - strand at 78.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 76,024 - GFF4500 0.41 +0.9 76,024 - GFF4500 0.41 -0.8 76,166 + GFF4500 0.57 +0.1 76,178 + GFF4500 0.58 -0.7 76,178 + GFF4500 0.58 -1.1 76,178 + GFF4500 0.58 +0.0 76,179 - GFF4500 0.58 +0.3 76,179 - GFF4500 0.58 +0.0 76,212 + GFF4500 0.62 -2.1 76,305 - GFF4500 0.72 -2.6 76,451 + GFF4500 0.89 -0.9 76,451 + GFF4500 0.89 -1.0 76,584 - -1.1 76,612 + +0.4 76,612 + -1.4 76,612 + +0.6 76,613 - +0.1 76,647 + -0.8 77,016 + -0.2 77,016 + -0.5 77,017 - -0.5 77,094 + GFF4501 0.13 -0.5 77,097 + GFF4501 0.13 -0.8 77,097 + GFF4501 0.13 -1.0 77,163 + GFF4501 0.22 +0.8 77,164 - GFF4501 0.22 -0.6 77,199 + GFF4501 0.27 -0.3 77,200 - GFF4501 0.27 -0.3 77,211 + GFF4501 0.28 -0.5 77,211 + GFF4501 0.28 -1.5 77,212 - GFF4501 0.28 -1.1 77,374 - GFF4501 0.50 -3.5 77,374 - GFF4501 0.50 -0.3 77,374 - GFF4501 0.50 -0.7 77,472 + GFF4501 0.62 -0.7 77,520 + GFF4501 0.69 +0.0 77,520 + GFF4501 0.69 -1.4 77,520 + GFF4501 0.69 +0.8 77,520 + GFF4501 0.69 -0.9 77,521 - GFF4501 0.69 +0.7 77,521 - GFF4501 0.69 -0.3 77,749 - -0.6 77,749 - -1.1 77,777 - -0.8 77,777 - -0.3 77,944 + GFF4502 0.25 -0.3 77,945 - GFF4502 0.25 -0.9 78,049 + GFF4502 0.40 -0.9 78,049 + GFF4502 0.40 -1.8 78,050 - GFF4502 0.40 -0.5 78,072 + GFF4502 0.43 +0.4 78,072 + GFF4502 0.43 -0.2 78,072 + GFF4502 0.43 -0.2 78,072 + GFF4502 0.43 -1.5 78,072 + GFF4502 0.43 -2.1 78,072 + GFF4502 0.43 -1.7 78,073 - GFF4502 0.43 -0.6 78,073 - GFF4502 0.43 -1.0 78,313 + GFF4502 0.76 -1.0 78,313 + GFF4502 0.76 +0.2 78,314 - GFF4502 0.76 -1.3 78,589 + -0.4 78,590 - -0.5 78,590 - -0.2
Or see this region's nucleotide sequence