Strain Fitness in Xanthobacter sp. DMC5 around GFF443

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF442 and GFF443 are separated by 92 nucleotidesGFF443 and GFF444 overlap by 4 nucleotides GFF442 - hypothetical protein, at 464,836 to 466,338 GFF442 GFF443 - Ethanolamine ammonia-lyase light chain, at 466,431 to 467,207 GFF443 GFF444 - Ethanolamine ammonia-lyase heavy chain, at 467,204 to 468,592 GFF444 Position (kb) 466 467 468Strain fitness (log2 ratio) -2 -1 0 1 2at 465.431 kb on + strand, within GFF442at 465.431 kb on + strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.573 kb on + strand, within GFF442at 465.574 kb on - strand, within GFF442at 465.574 kb on - strand, within GFF442at 465.891 kb on - strand, within GFF442at 465.950 kb on + strand, within GFF442at 465.950 kb on + strand, within GFF442at 465.950 kb on + strand, within GFF442at 465.951 kb on - strand, within GFF442at 465.951 kb on - strand, within GFF442at 465.951 kb on - strand, within GFF442at 465.951 kb on - strand, within GFF442at 465.992 kb on + strand, within GFF442at 465.992 kb on + strand, within GFF442at 465.992 kb on + strand, within GFF442at 465.993 kb on - strand, within GFF442at 465.993 kb on - strand, within GFF442at 465.993 kb on - strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.125 kb on - strand, within GFF442at 466.286 kb on + strandat 466.287 kb on - strandat 466.307 kb on + strandat 466.307 kb on + strandat 466.307 kb on + strandat 466.308 kb on - strandat 466.308 kb on - strandat 466.308 kb on - strandat 466.311 kb on + strandat 466.364 kb on + strandat 466.364 kb on + strandat 466.365 kb on - strandat 466.365 kb on - strandat 466.365 kb on - strandat 466.592 kb on + strand, within GFF443at 466.639 kb on + strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.648 kb on + strand, within GFF443at 466.648 kb on + strand, within GFF443at 466.648 kb on + strand, within GFF443at 466.649 kb on - strand, within GFF443at 466.972 kb on + strand, within GFF443at 466.972 kb on + strand, within GFF443at 466.973 kb on - strand, within GFF443at 466.973 kb on - strand, within GFF443at 467.066 kb on + strand, within GFF443at 467.067 kb on - strand, within GFF443at 467.226 kb on + strandat 467.226 kb on + strandat 467.349 kb on + strand, within GFF444at 467.379 kb on + strand, within GFF444at 467.383 kb on + strand, within GFF444at 467.390 kb on + strand, within GFF444at 467.390 kb on + strand, within GFF444at 467.391 kb on - strand, within GFF444at 467.421 kb on + strand, within GFF444at 467.421 kb on + strand, within GFF444at 467.422 kb on - strand, within GFF444at 467.422 kb on - strand, within GFF444at 467.422 kb on - strand, within GFF444at 467.496 kb on + strand, within GFF444at 467.496 kb on + strand, within GFF444at 467.583 kb on + strand, within GFF444at 467.589 kb on + strand, within GFF444at 467.589 kb on + strand, within GFF444at 467.589 kb on + strand, within GFF444at 467.589 kb on + strand, within GFF444at 467.656 kb on - strand, within GFF444at 467.737 kb on - strand, within GFF444at 468.045 kb on + strand, within GFF444at 468.045 kb on + strand, within GFF444

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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465,431 + GFF442 0.40 -0.0
465,431 + GFF442 0.40 -0.1
465,432 - GFF442 0.40 +0.9
465,432 - GFF442 0.40 -0.0
465,432 - GFF442 0.40 +0.6
465,432 - GFF442 0.40 +0.3
465,432 - GFF442 0.40 -0.5
465,573 + GFF442 0.49 -1.2
465,574 - GFF442 0.49 +0.7
465,574 - GFF442 0.49 +0.9
465,891 - GFF442 0.70 -0.0
465,950 + GFF442 0.74 -0.7
465,950 + GFF442 0.74 +0.0
465,950 + GFF442 0.74 +0.7
465,951 - GFF442 0.74 -0.0
465,951 - GFF442 0.74 +0.0
465,951 - GFF442 0.74 -0.3
465,951 - GFF442 0.74 +0.3
465,992 + GFF442 0.77 +0.8
465,992 + GFF442 0.77 +0.2
465,992 + GFF442 0.77 +0.8
465,993 - GFF442 0.77 +0.5
465,993 - GFF442 0.77 -0.5
465,993 - GFF442 0.77 +0.3
466,124 + GFF442 0.86 -0.6
466,124 + GFF442 0.86 -0.1
466,124 + GFF442 0.86 +0.3
466,124 + GFF442 0.86 -1.4
466,124 + GFF442 0.86 -0.8
466,125 - GFF442 0.86 -0.4
466,286 + -1.8
466,287 - -0.1
466,307 + -1.3
466,307 + +0.1
466,307 + -0.5
466,308 - -0.0
466,308 - +0.7
466,308 - +0.8
466,311 + -0.7
466,364 + -0.2
466,364 + -0.4
466,365 - +0.6
466,365 - +0.8
466,365 - +0.6
466,592 + GFF443 0.21 +0.8
466,639 + GFF443 0.27 -0.0
466,640 - GFF443 0.27 -0.8
466,640 - GFF443 0.27 -0.5
466,640 - GFF443 0.27 +1.5
466,640 - GFF443 0.27 -1.0
466,640 - GFF443 0.27 -1.1
466,648 + GFF443 0.28 -0.6
466,648 + GFF443 0.28 +0.2
466,648 + GFF443 0.28 +1.5
466,649 - GFF443 0.28 -1.8
466,972 + GFF443 0.70 +0.2
466,972 + GFF443 0.70 +0.5
466,973 - GFF443 0.70 -0.2
466,973 - GFF443 0.70 -0.2
467,066 + GFF443 0.82 -0.7
467,067 - GFF443 0.82 -0.1
467,226 + -1.8
467,226 + +1.9
467,349 + GFF444 0.10 -0.4
467,379 + GFF444 0.13 -0.3
467,383 + GFF444 0.13 -0.3
467,390 + GFF444 0.13 -1.2
467,390 + GFF444 0.13 +0.3
467,391 - GFF444 0.13 +0.6
467,421 + GFF444 0.16 -1.1
467,421 + GFF444 0.16 +0.4
467,422 - GFF444 0.16 +0.3
467,422 - GFF444 0.16 +0.1
467,422 - GFF444 0.16 -0.1
467,496 + GFF444 0.21 -0.7
467,496 + GFF444 0.21 +0.9
467,583 + GFF444 0.27 +0.1
467,589 + GFF444 0.28 +0.2
467,589 + GFF444 0.28 -0.3
467,589 + GFF444 0.28 -0.7
467,589 + GFF444 0.28 +0.8
467,656 - GFF444 0.33 -1.4
467,737 - GFF444 0.38 -0.1
468,045 + GFF444 0.61 +0.8
468,045 + GFF444 0.61 -0.2

Or see this region's nucleotide sequence