Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4353 and GFF4354 are separated by 3 nucleotides GFF4354 and GFF4355 are separated by 19 nucleotides GFF4355 and GFF4356 are separated by 358 nucleotides
GFF4353 - hypothetical protein, at 137,319 to 138,344
GFF4353
GFF4354 - hypothetical protein, at 138,348 to 139,811
GFF4354
GFF4355 - hypothetical protein, at 139,831 to 140,334
GFF4355
GFF4356 - D-3-phosphoglycerate dehydrogenase, at 140,693 to 141,952
GFF4356
Position (kb) 138
139
140 Strain fitness (log2 ratio) -2
-1
0
1
2 at 137.532 kb on + strand, within GFF4353 at 137.676 kb on + strand, within GFF4353 at 137.676 kb on + strand, within GFF4353 at 137.676 kb on + strand, within GFF4353 at 137.677 kb on - strand, within GFF4353 at 137.910 kb on + strand, within GFF4353 at 137.911 kb on - strand, within GFF4353 at 138.078 kb on + strand, within GFF4353 at 138.078 kb on + strand, within GFF4353 at 138.078 kb on + strand, within GFF4353 at 138.078 kb on + strand, within GFF4353 at 138.078 kb on + strand, within GFF4353 at 138.078 kb on + strand, within GFF4353 at 138.078 kb on + strand, within GFF4353 at 138.079 kb on - strand, within GFF4353 at 138.079 kb on - strand, within GFF4353 at 138.079 kb on - strand, within GFF4353 at 138.079 kb on - strand, within GFF4353 at 138.079 kb on - strand, within GFF4353 at 138.606 kb on + strand, within GFF4354 at 138.606 kb on + strand, within GFF4354 at 138.607 kb on - strand, within GFF4354 at 138.607 kb on - strand, within GFF4354 at 138.607 kb on - strand, within GFF4354 at 138.615 kb on + strand, within GFF4354 at 138.675 kb on + strand, within GFF4354 at 138.676 kb on - strand, within GFF4354 at 139.575 kb on + strand, within GFF4354 at 139.575 kb on + strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.576 kb on - strand, within GFF4354 at 139.722 kb on + strand at 139.723 kb on - strand at 140.062 kb on + strand, within GFF4355 at 140.063 kb on - strand, within GFF4355 at 140.631 kb on + strand at 140.632 kb on - strand at 140.632 kb on - strand at 140.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 137,532 + GFF4353 0.21 +0.4 137,676 + GFF4353 0.35 -0.4 137,676 + GFF4353 0.35 +0.2 137,676 + GFF4353 0.35 -0.1 137,677 - GFF4353 0.35 -0.2 137,910 + GFF4353 0.58 -0.5 137,911 - GFF4353 0.58 -0.4 138,078 + GFF4353 0.74 -0.0 138,078 + GFF4353 0.74 +0.2 138,078 + GFF4353 0.74 +0.2 138,078 + GFF4353 0.74 +0.6 138,078 + GFF4353 0.74 -0.1 138,078 + GFF4353 0.74 +1.3 138,078 + GFF4353 0.74 -0.2 138,079 - GFF4353 0.74 -0.6 138,079 - GFF4353 0.74 +0.0 138,079 - GFF4353 0.74 +1.2 138,079 - GFF4353 0.74 -0.2 138,079 - GFF4353 0.74 -0.6 138,606 + GFF4354 0.18 +2.5 138,606 + GFF4354 0.18 -1.4 138,607 - GFF4354 0.18 +0.0 138,607 - GFF4354 0.18 +1.4 138,607 - GFF4354 0.18 +0.2 138,615 + GFF4354 0.18 -0.7 138,675 + GFF4354 0.22 -1.3 138,676 - GFF4354 0.22 -0.6 139,575 + GFF4354 0.84 +1.0 139,575 + GFF4354 0.84 +0.4 139,576 - GFF4354 0.84 +0.7 139,576 - GFF4354 0.84 +0.0 139,576 - GFF4354 0.84 +0.1 139,576 - GFF4354 0.84 -0.2 139,576 - GFF4354 0.84 +0.6 139,576 - GFF4354 0.84 -0.7 139,576 - GFF4354 0.84 -2.2 139,576 - GFF4354 0.84 -0.0 139,576 - GFF4354 0.84 +0.4 139,576 - GFF4354 0.84 -0.1 139,722 + -0.8 139,723 - +0.2 140,062 + GFF4355 0.46 +0.1 140,063 - GFF4355 0.46 -0.6 140,631 + -0.1 140,632 - -1.4 140,632 - -0.6 140,632 - -0.6
Or see this region's nucleotide sequence