Strain Fitness in Xanthobacter sp. DMC5 around GFF433

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF431 and GFF432 are separated by 6 nucleotidesGFF432 and GFF433 are separated by 229 nucleotidesGFF433 and GFF434 overlap by 1 nucleotides GFF431 - Sialic acid TRAP transporter large permease protein SiaM, at 453,932 to 455,338 GFF431 GFF432 - hypothetical protein, at 455,345 to 455,752 GFF432 GFF433 - Lycopene beta-cyclase, at 455,982 to 457,139 GFF433 GFF434 - Phytoene desaturase (lycopene-forming), at 457,139 to 458,656 GFF434 Position (kb) 455 456 457 458Strain fitness (log2 ratio) -2 -1 0 1 2at 455.285 kb on + strandat 455.286 kb on - strandat 455.286 kb on - strandat 455.286 kb on - strandat 455.409 kb on + strand, within GFF432at 455.409 kb on + strand, within GFF432at 455.409 kb on + strand, within GFF432at 455.410 kb on - strand, within GFF432at 455.410 kb on - strand, within GFF432at 455.410 kb on - strand, within GFF432at 455.410 kb on - strand, within GFF432at 455.412 kb on + strand, within GFF432at 455.412 kb on + strand, within GFF432at 455.413 kb on - strand, within GFF432at 455.413 kb on - strand, within GFF432at 455.413 kb on - strand, within GFF432at 455.415 kb on + strand, within GFF432at 455.415 kb on + strand, within GFF432at 455.841 kb on + strandat 455.841 kb on + strandat 455.842 kb on - strandat 455.842 kb on - strandat 455.842 kb on - strandat 455.842 kb on - strandat 455.987 kb on + strandat 455.988 kb on - strandat 456.207 kb on + strand, within GFF433at 456.232 kb on - strand, within GFF433at 456.232 kb on - strand, within GFF433at 456.528 kb on + strand, within GFF433at 456.528 kb on + strand, within GFF433at 456.528 kb on + strand, within GFF433at 456.529 kb on - strand, within GFF433at 456.529 kb on - strand, within GFF433at 456.574 kb on - strand, within GFF433at 456.574 kb on - strand, within GFF433at 456.574 kb on - strand, within GFF433at 456.577 kb on - strand, within GFF433at 456.577 kb on - strand, within GFF433at 456.793 kb on - strand, within GFF433at 456.966 kb on + strand, within GFF433at 456.988 kb on - strand, within GFF433at 457.021 kb on - strand, within GFF433at 457.062 kb on - strandat 457.062 kb on - strandat 457.137 kb on + strandat 457.138 kb on - strandat 457.280 kb on + strandat 457.280 kb on + strandat 457.280 kb on + strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.281 kb on - strandat 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.358 kb on + strand, within GFF434at 457.359 kb on - strand, within GFF434at 457.454 kb on + strand, within GFF434at 457.454 kb on + strand, within GFF434at 457.455 kb on - strand, within GFF434at 457.521 kb on - strand, within GFF434at 457.565 kb on + strand, within GFF434at 457.565 kb on + strand, within GFF434at 457.566 kb on - strand, within GFF434at 457.566 kb on - strand, within GFF434at 457.566 kb on - strand, within GFF434at 457.658 kb on + strand, within GFF434at 457.680 kb on + strand, within GFF434at 457.681 kb on - strand, within GFF434at 457.760 kb on + strand, within GFF434at 457.761 kb on - strand, within GFF434at 457.761 kb on - strand, within GFF434at 457.994 kb on + strand, within GFF434at 457.994 kb on + strand, within GFF434at 457.994 kb on + strand, within GFF434at 457.994 kb on + strand, within GFF434at 457.995 kb on - strand, within GFF434at 457.995 kb on - strand, within GFF434at 458.084 kb on + strand, within GFF434

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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455,285 + +0.3
455,286 - -0.1
455,286 - +2.2
455,286 - -0.7
455,409 + GFF432 0.16 +0.4
455,409 + GFF432 0.16 +0.4
455,409 + GFF432 0.16 -0.2
455,410 - GFF432 0.16 +1.3
455,410 - GFF432 0.16 -0.2
455,410 - GFF432 0.16 +0.4
455,410 - GFF432 0.16 +0.2
455,412 + GFF432 0.16 +0.1
455,412 + GFF432 0.16 +0.3
455,413 - GFF432 0.17 +1.6
455,413 - GFF432 0.17 -1.2
455,413 - GFF432 0.17 -0.3
455,415 + GFF432 0.17 -0.2
455,415 + GFF432 0.17 +0.3
455,841 + -1.7
455,841 + +0.5
455,842 - -0.7
455,842 - +1.3
455,842 - +0.5
455,842 - -1.3
455,987 + +0.1
455,988 - -0.7
456,207 + GFF433 0.19 +0.4
456,232 - GFF433 0.22 -1.4
456,232 - GFF433 0.22 -0.1
456,528 + GFF433 0.47 +0.6
456,528 + GFF433 0.47 -1.5
456,528 + GFF433 0.47 -0.4
456,529 - GFF433 0.47 -0.5
456,529 - GFF433 0.47 -1.6
456,574 - GFF433 0.51 +0.4
456,574 - GFF433 0.51 +0.1
456,574 - GFF433 0.51 -0.9
456,577 - GFF433 0.51 -0.0
456,577 - GFF433 0.51 +0.0
456,793 - GFF433 0.70 +0.3
456,966 + GFF433 0.85 +1.6
456,988 - GFF433 0.87 +1.6
457,021 - GFF433 0.90 +1.1
457,062 - +0.3
457,062 - +0.7
457,137 + -0.9
457,138 - -1.3
457,280 + -0.2
457,280 + +0.4
457,280 + +0.7
457,281 - +0.0
457,281 - -0.3
457,281 - -2.1
457,281 - -0.1
457,281 - -0.6
457,281 - -0.1
457,281 - -0.3
457,358 + GFF434 0.14 -0.5
457,358 + GFF434 0.14 +0.0
457,358 + GFF434 0.14 -1.1
457,358 + GFF434 0.14 +1.1
457,358 + GFF434 0.14 +0.2
457,358 + GFF434 0.14 +0.1
457,358 + GFF434 0.14 +0.6
457,359 - GFF434 0.14 -2.1
457,454 + GFF434 0.21 +0.9
457,454 + GFF434 0.21 +0.9
457,455 - GFF434 0.21 +0.6
457,521 - GFF434 0.25 -1.3
457,565 + GFF434 0.28 -0.5
457,565 + GFF434 0.28 -1.1
457,566 - GFF434 0.28 +0.3
457,566 - GFF434 0.28 -1.4
457,566 - GFF434 0.28 -2.2
457,658 + GFF434 0.34 +1.2
457,680 + GFF434 0.36 +0.6
457,681 - GFF434 0.36 +1.4
457,760 + GFF434 0.41 +0.3
457,761 - GFF434 0.41 +0.3
457,761 - GFF434 0.41 -0.7
457,994 + GFF434 0.56 -0.5
457,994 + GFF434 0.56 -1.0
457,994 + GFF434 0.56 +0.1
457,994 + GFF434 0.56 +0.6
457,995 - GFF434 0.56 +0.7
457,995 - GFF434 0.56 -0.1
458,084 + GFF434 0.62 +0.3

Or see this region's nucleotide sequence