Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4323 and GFF4324 overlap by 4 nucleotides GFF4324 and GFF4325 are separated by 3 nucleotides
GFF4323 - hypothetical protein, at 102,888 to 104,999
GFF4323
GFF4324 - Putative FAD-dependent oxidoreductase LodB, at 104,996 to 106,111
GFF4324
GFF4325 - Cadmium, zinc and cobalt-transporting ATPase, at 106,115 to 107,998
GFF4325
Position (kb) 104
105
106
107 Strain fitness (log2 ratio) -2
-1
0
1
2 at 104.259 kb on + strand, within GFF4323 at 104.259 kb on + strand, within GFF4323 at 104.260 kb on - strand, within GFF4323 at 104.262 kb on + strand, within GFF4323 at 104.263 kb on - strand, within GFF4323 at 104.397 kb on + strand, within GFF4323 at 104.397 kb on + strand, within GFF4323 at 104.398 kb on - strand, within GFF4323 at 104.526 kb on + strand, within GFF4323 at 104.526 kb on + strand, within GFF4323 at 104.601 kb on + strand, within GFF4323 at 104.601 kb on + strand, within GFF4323 at 104.601 kb on + strand, within GFF4323 at 104.643 kb on - strand, within GFF4323 at 104.659 kb on - strand, within GFF4323 at 104.784 kb on + strand, within GFF4323 at 104.787 kb on + strand, within GFF4323 at 105.356 kb on - strand, within GFF4324 at 105.356 kb on - strand, within GFF4324 at 105.356 kb on - strand, within GFF4324 at 105.629 kb on + strand, within GFF4324 at 105.630 kb on - strand, within GFF4324 at 105.987 kb on - strand, within GFF4324 at 106.043 kb on + strand at 106.043 kb on + strand at 106.044 kb on - strand at 106.044 kb on - strand at 106.109 kb on + strand at 106.110 kb on - strand at 106.110 kb on - strand at 106.221 kb on + strand at 106.614 kb on + strand, within GFF4325 at 106.791 kb on + strand, within GFF4325 at 106.791 kb on + strand, within GFF4325 at 107.108 kb on + strand, within GFF4325
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 104,259 + GFF4323 0.65 +0.3 104,259 + GFF4323 0.65 +1.1 104,260 - GFF4323 0.65 -0.2 104,262 + GFF4323 0.65 +0.7 104,263 - GFF4323 0.65 +0.3 104,397 + GFF4323 0.71 -0.6 104,397 + GFF4323 0.71 +0.2 104,398 - GFF4323 0.71 -0.5 104,526 + GFF4323 0.78 +0.5 104,526 + GFF4323 0.78 -0.5 104,601 + GFF4323 0.81 +0.1 104,601 + GFF4323 0.81 +0.4 104,601 + GFF4323 0.81 +2.2 104,643 - GFF4323 0.83 +0.3 104,659 - GFF4323 0.84 -0.5 104,784 + GFF4323 0.90 +1.1 104,787 + GFF4323 0.90 -0.4 105,356 - GFF4324 0.32 -1.1 105,356 - GFF4324 0.32 +0.9 105,356 - GFF4324 0.32 +0.9 105,629 + GFF4324 0.57 +0.2 105,630 - GFF4324 0.57 -0.4 105,987 - GFF4324 0.89 +0.3 106,043 + +0.6 106,043 + +0.1 106,044 - -1.8 106,044 - +0.3 106,109 + +0.1 106,110 - +0.7 106,110 - -0.7 106,221 + +0.1 106,614 + GFF4325 0.26 +0.3 106,791 + GFF4325 0.36 +1.1 106,791 + GFF4325 0.36 +0.4 107,108 + GFF4325 0.53 +0.3
Or see this region's nucleotide sequence