Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF424 and GFF425 are separated by 99 nucleotides GFF425 and GFF426 are separated by 373 nucleotides
GFF424 - Peptide chain release factor RF2, at 439,626 to 440,756
GFF424
GFF425 - Oxygen sensor protein DosP, at 440,856 to 443,348
GFF425
GFF426 - Penicillin-binding protein 1A, at 443,722 to 446,145
GFF426
Position (kb) 440
441
442
443
444 Strain fitness (log2 ratio) -1
0
1 at 441.143 kb on - strand, within GFF425 at 441.257 kb on + strand, within GFF425 at 441.258 kb on - strand, within GFF425 at 441.258 kb on - strand, within GFF425 at 441.448 kb on + strand, within GFF425 at 441.448 kb on + strand, within GFF425 at 441.449 kb on - strand, within GFF425 at 441.826 kb on + strand, within GFF425 at 442.033 kb on + strand, within GFF425 at 442.033 kb on + strand, within GFF425 at 442.591 kb on - strand, within GFF425 at 442.936 kb on + strand, within GFF425 at 442.936 kb on + strand, within GFF425 at 442.937 kb on - strand, within GFF425 at 443.062 kb on + strand, within GFF425 at 443.065 kb on + strand, within GFF425 at 443.066 kb on - strand, within GFF425 at 443.066 kb on - strand, within GFF425 at 443.336 kb on + strand at 443.337 kb on - strand at 443.337 kb on - strand at 443.367 kb on + strand at 443.423 kb on + strand at 443.424 kb on - strand at 443.450 kb on + strand at 443.456 kb on - strand at 443.456 kb on - strand at 443.459 kb on + strand at 443.558 kb on - strand at 443.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 441,143 - GFF425 0.12 +0.0 441,257 + GFF425 0.16 +0.5 441,258 - GFF425 0.16 +1.0 441,258 - GFF425 0.16 +0.8 441,448 + GFF425 0.24 +0.1 441,448 + GFF425 0.24 -0.5 441,449 - GFF425 0.24 +0.4 441,826 + GFF425 0.39 +0.2 442,033 + GFF425 0.47 +0.4 442,033 + GFF425 0.47 +0.1 442,591 - GFF425 0.70 +0.2 442,936 + GFF425 0.83 -0.4 442,936 + GFF425 0.83 +1.3 442,937 - GFF425 0.83 +0.9 443,062 + GFF425 0.88 +1.1 443,065 + GFF425 0.89 +0.5 443,066 - GFF425 0.89 -1.0 443,066 - GFF425 0.89 +0.7 443,336 + -1.3 443,337 - -1.4 443,337 - +0.7 443,367 + -0.5 443,423 + -0.7 443,424 - +0.9 443,450 + +0.9 443,456 - -0.6 443,456 - -0.5 443,459 + +0.4 443,558 - +0.7 443,811 - +1.6
Or see this region's nucleotide sequence