Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4210 and GFF4211 are separated by 39 nucleotides GFF4211 and GFF4212 overlap by 14 nucleotides GFF4212 and GFF4213 overlap by 4 nucleotides
GFF4210 - Efflux pump membrane transporter BepG, at 237,330 to 240,491
GFF4210
GFF4211 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 240,531 to 241,232
GFF4211
GFF4212 - Lipopolysaccharide export system ATP-binding protein LptB, at 241,219 to 242,004
GFF4212
GFF4213 - hypothetical protein, at 242,001 to 242,957
GFF4213
Position (kb) 240
241
242 Strain fitness (log2 ratio) -1
0
1 at 239.592 kb on + strand, within GFF4210 at 239.592 kb on + strand, within GFF4210 at 239.593 kb on - strand, within GFF4210 at 239.593 kb on - strand, within GFF4210 at 239.593 kb on - strand, within GFF4210 at 239.593 kb on - strand, within GFF4210 at 239.593 kb on - strand, within GFF4210 at 239.613 kb on + strand, within GFF4210 at 239.679 kb on + strand, within GFF4210 at 239.679 kb on + strand, within GFF4210 at 239.679 kb on + strand, within GFF4210 at 239.680 kb on - strand, within GFF4210 at 239.680 kb on - strand, within GFF4210 at 239.775 kb on + strand, within GFF4210 at 239.997 kb on + strand, within GFF4210 at 239.997 kb on + strand, within GFF4210 at 239.998 kb on - strand, within GFF4210 at 240.060 kb on + strand, within GFF4210 at 240.099 kb on + strand, within GFF4210 at 240.099 kb on + strand, within GFF4210 at 240.396 kb on + strand at 240.397 kb on - strand at 240.397 kb on - strand at 240.544 kb on + strand at 240.544 kb on + strand at 240.544 kb on + strand at 240.622 kb on + strand, within GFF4211 at 240.622 kb on + strand, within GFF4211 at 240.623 kb on - strand, within GFF4211 at 241.262 kb on + strand at 241.263 kb on - strand at 241.826 kb on - strand, within GFF4212 at 241.848 kb on - strand, within GFF4212 at 241.994 kb on - strand at 242.104 kb on + strand, within GFF4213
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 239,592 + GFF4210 0.72 -0.6 239,592 + GFF4210 0.72 -0.2 239,593 - GFF4210 0.72 -0.5 239,593 - GFF4210 0.72 +0.8 239,593 - GFF4210 0.72 -0.4 239,593 - GFF4210 0.72 -0.3 239,593 - GFF4210 0.72 -0.3 239,613 + GFF4210 0.72 +0.4 239,679 + GFF4210 0.74 -0.2 239,679 + GFF4210 0.74 +0.4 239,679 + GFF4210 0.74 +0.6 239,680 - GFF4210 0.74 -0.9 239,680 - GFF4210 0.74 +0.3 239,775 + GFF4210 0.77 -0.1 239,997 + GFF4210 0.84 -0.9 239,997 + GFF4210 0.84 -0.7 239,998 - GFF4210 0.84 -0.3 240,060 + GFF4210 0.86 -1.4 240,099 + GFF4210 0.88 +0.4 240,099 + GFF4210 0.88 -0.1 240,396 + -0.7 240,397 - +0.3 240,397 - -1.4 240,544 + +1.0 240,544 + -0.2 240,544 + +0.2 240,622 + GFF4211 0.13 -0.0 240,622 + GFF4211 0.13 -0.2 240,623 - GFF4211 0.13 +0.3 241,262 + -0.3 241,263 - +0.0 241,826 - GFF4212 0.77 -0.2 241,848 - GFF4212 0.80 +0.6 241,994 - +0.1 242,104 + GFF4213 0.11 +0.9
Or see this region's nucleotide sequence