Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4149 and GFF4150 are separated by 187 nucleotides GFF4150 and GFF4151 are separated by 123 nucleotides GFF4151 and GFF4152 overlap by 4 nucleotides
GFF4149 - hypothetical protein, at 160,508 to 161,695
GFF4149
GFF4150 - hypothetical protein, at 161,883 to 162,464
GFF4150
GFF4151 - Nickel and cobalt resistance protein CnrA, at 162,588 to 165,737
GFF4151
GFF4152 - Multidrug resistance protein MdtE, at 165,734 to 166,966
GFF4152
Position (kb) 162
163
164
165
166 Strain fitness (log2 ratio) -2
-1
0
1 at 162.048 kb on + strand, within GFF4150 at 162.048 kb on + strand, within GFF4150 at 162.049 kb on - strand, within GFF4150 at 162.130 kb on - strand, within GFF4150 at 162.153 kb on + strand, within GFF4150 at 162.153 kb on + strand, within GFF4150 at 162.154 kb on - strand, within GFF4150 at 162.180 kb on + strand, within GFF4150 at 162.181 kb on - strand, within GFF4150 at 162.308 kb on - strand, within GFF4150 at 162.373 kb on - strand, within GFF4150 at 162.662 kb on - strand at 162.662 kb on - strand at 162.943 kb on - strand, within GFF4151 at 163.306 kb on + strand, within GFF4151 at 163.306 kb on + strand, within GFF4151 at 163.462 kb on + strand, within GFF4151 at 163.891 kb on + strand, within GFF4151 at 163.891 kb on + strand, within GFF4151 at 163.891 kb on + strand, within GFF4151 at 163.892 kb on - strand, within GFF4151 at 163.892 kb on - strand, within GFF4151 at 163.892 kb on - strand, within GFF4151 at 163.892 kb on - strand, within GFF4151 at 164.296 kb on + strand, within GFF4151 at 165.005 kb on + strand, within GFF4151 at 165.072 kb on - strand, within GFF4151 at 165.113 kb on - strand, within GFF4151 at 165.113 kb on - strand, within GFF4151 at 165.113 kb on - strand, within GFF4151 at 165.242 kb on - strand, within GFF4151 at 165.242 kb on - strand, within GFF4151 at 165.253 kb on + strand, within GFF4151 at 165.253 kb on + strand, within GFF4151 at 165.254 kb on - strand, within GFF4151 at 165.265 kb on + strand, within GFF4151 at 165.266 kb on - strand, within GFF4151 at 165.343 kb on + strand, within GFF4151 at 165.344 kb on - strand, within GFF4151 at 165.583 kb on + strand at 165.583 kb on + strand at 165.583 kb on + strand at 165.590 kb on - strand at 165.590 kb on - strand at 165.590 kb on - strand at 165.590 kb on - strand at 165.941 kb on - strand, within GFF4152 at 165.941 kb on - strand, within GFF4152 at 165.942 kb on + strand, within GFF4152 at 165.943 kb on - strand, within GFF4152 at 165.943 kb on - strand, within GFF4152 at 166.146 kb on + strand, within GFF4152 at 166.146 kb on + strand, within GFF4152
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 162,048 + GFF4150 0.28 +0.5 162,048 + GFF4150 0.28 +0.3 162,049 - GFF4150 0.29 -0.9 162,130 - GFF4150 0.42 -0.1 162,153 + GFF4150 0.46 -0.4 162,153 + GFF4150 0.46 -0.6 162,154 - GFF4150 0.47 +0.0 162,180 + GFF4150 0.51 +1.4 162,181 - GFF4150 0.51 +0.1 162,308 - GFF4150 0.73 +0.5 162,373 - GFF4150 0.84 -0.3 162,662 - -0.8 162,662 - -0.1 162,943 - GFF4151 0.11 +0.0 163,306 + GFF4151 0.23 +0.7 163,306 + GFF4151 0.23 +0.7 163,462 + GFF4151 0.28 -0.3 163,891 + GFF4151 0.41 +1.5 163,891 + GFF4151 0.41 +0.5 163,891 + GFF4151 0.41 -0.6 163,892 - GFF4151 0.41 -1.0 163,892 - GFF4151 0.41 -1.6 163,892 - GFF4151 0.41 +0.3 163,892 - GFF4151 0.41 -0.4 164,296 + GFF4151 0.54 -0.4 165,005 + GFF4151 0.77 -1.0 165,072 - GFF4151 0.79 +1.2 165,113 - GFF4151 0.80 -1.1 165,113 - GFF4151 0.80 -0.1 165,113 - GFF4151 0.80 -0.2 165,242 - GFF4151 0.84 +0.6 165,242 - GFF4151 0.84 +0.4 165,253 + GFF4151 0.85 -0.0 165,253 + GFF4151 0.85 +0.1 165,254 - GFF4151 0.85 -0.4 165,265 + GFF4151 0.85 -1.5 165,266 - GFF4151 0.85 +1.1 165,343 + GFF4151 0.87 -0.0 165,344 - GFF4151 0.87 -1.9 165,583 + +0.1 165,583 + +0.5 165,583 + +0.3 165,590 - +0.0 165,590 - +0.0 165,590 - +0.7 165,590 - -0.1 165,941 - GFF4152 0.17 +0.9 165,941 - GFF4152 0.17 +0.6 165,942 + GFF4152 0.17 -1.5 165,943 - GFF4152 0.17 -0.2 165,943 - GFF4152 0.17 -0.0 166,146 + GFF4152 0.33 -0.4 166,146 + GFF4152 0.33 -1.2
Or see this region's nucleotide sequence