Strain Fitness in Xanthobacter sp. DMC5 around GFF4050

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4049 and GFF4050 are separated by 115 nucleotidesGFF4050 and GFF4051 are separated by 22 nucleotidesGFF4051 and GFF4052 overlap by 4 nucleotides GFF4049 - 2,6-dihydroxypyridine 3-monooxygenase, at 32,559 to 33,674 GFF4049 GFF4050 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 33,790 to 35,814 GFF4050 GFF4051 - hypothetical protein, at 35,837 to 36,043 GFF4051 GFF4052 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 36,040 to 36,939 GFF4052 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -1 0 1 2 3at 32.890 kb on - strand, within GFF4049at 32.949 kb on + strand, within GFF4049at 32.949 kb on + strand, within GFF4049at 32.949 kb on + strand, within GFF4049at 32.950 kb on - strand, within GFF4049at 32.950 kb on - strand, within GFF4049at 32.950 kb on - strand, within GFF4049at 33.051 kb on + strand, within GFF4049at 33.051 kb on + strand, within GFF4049at 33.051 kb on + strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.141 kb on + strand, within GFF4049at 33.172 kb on - strand, within GFF4049at 33.219 kb on + strand, within GFF4049at 33.219 kb on + strand, within GFF4049at 33.219 kb on + strand, within GFF4049at 33.244 kb on - strand, within GFF4049at 33.277 kb on - strand, within GFF4049at 33.431 kb on - strand, within GFF4049at 33.436 kb on - strand, within GFF4049at 33.600 kb on + strandat 33.600 kb on + strandat 33.601 kb on - strandat 33.601 kb on - strandat 33.601 kb on - strandat 33.601 kb on - strandat 33.601 kb on - strandat 33.642 kb on + strandat 33.683 kb on + strandat 33.685 kb on + strandat 33.685 kb on + strandat 33.685 kb on + strandat 33.686 kb on - strandat 33.690 kb on - strandat 33.690 kb on - strandat 33.720 kb on - strandat 33.721 kb on + strandat 33.722 kb on - strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.926 kb on - strandat 33.926 kb on - strandat 33.934 kb on + strandat 33.934 kb on + strandat 33.934 kb on + strandat 34.099 kb on + strand, within GFF4050at 34.099 kb on + strand, within GFF4050at 34.099 kb on + strand, within GFF4050at 34.100 kb on - strand, within GFF4050at 34.100 kb on - strand, within GFF4050at 34.177 kb on + strand, within GFF4050at 34.212 kb on + strand, within GFF4050at 34.320 kb on + strand, within GFF4050at 34.368 kb on + strand, within GFF4050at 34.369 kb on - strand, within GFF4050at 34.501 kb on + strand, within GFF4050at 34.501 kb on + strand, within GFF4050at 34.501 kb on + strand, within GFF4050at 34.758 kb on + strand, within GFF4050at 35.263 kb on + strand, within GFF4050at 35.275 kb on - strand, within GFF4050at 35.338 kb on + strand, within GFF4050at 35.813 kb on - strandat 35.993 kb on + strand, within GFF4051at 35.993 kb on + strand, within GFF4051at 35.993 kb on + strand, within GFF4051at 35.994 kb on - strand, within GFF4051at 36.027 kb on + strandat 36.027 kb on + strandat 36.028 kb on - strandat 36.028 kb on - strandat 36.107 kb on + strandat 36.108 kb on - strandat 36.163 kb on + strand, within GFF4052at 36.164 kb on - strand, within GFF4052at 36.164 kb on - strand, within GFF4052at 36.164 kb on - strand, within GFF4052at 36.164 kb on - strand, within GFF4052at 36.205 kb on + strand, within GFF4052at 36.205 kb on + strand, within GFF4052at 36.317 kb on - strand, within GFF4052at 36.481 kb on + strand, within GFF4052at 36.482 kb on - strand, within GFF4052at 36.559 kb on + strand, within GFF4052at 36.559 kb on + strand, within GFF4052at 36.560 kb on - strand, within GFF4052at 36.560 kb on - strand, within GFF4052at 36.593 kb on - strand, within GFF4052at 36.722 kb on - strand, within GFF4052

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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32,890 - GFF4049 0.30 +1.6
32,949 + GFF4049 0.35 -1.5
32,949 + GFF4049 0.35 -0.4
32,949 + GFF4049 0.35 +0.0
32,950 - GFF4049 0.35 +0.1
32,950 - GFF4049 0.35 +0.3
32,950 - GFF4049 0.35 +0.2
33,051 + GFF4049 0.44 +0.4
33,051 + GFF4049 0.44 +1.1
33,051 + GFF4049 0.44 -0.3
33,052 - GFF4049 0.44 +0.4
33,052 - GFF4049 0.44 -0.0
33,052 - GFF4049 0.44 -1.1
33,052 - GFF4049 0.44 -0.5
33,052 - GFF4049 0.44 -0.9
33,141 + GFF4049 0.52 -0.8
33,172 - GFF4049 0.55 -0.8
33,219 + GFF4049 0.59 +0.8
33,219 + GFF4049 0.59 -0.1
33,219 + GFF4049 0.59 -0.3
33,244 - GFF4049 0.61 -0.8
33,277 - GFF4049 0.64 +0.3
33,431 - GFF4049 0.78 -0.1
33,436 - GFF4049 0.79 +0.3
33,600 + -0.3
33,600 + -0.2
33,601 - +0.4
33,601 - -0.1
33,601 - -1.5
33,601 - -0.3
33,601 - +0.8
33,642 + -0.0
33,683 + -0.5
33,685 + +0.8
33,685 + +0.1
33,685 + -0.3
33,686 - -1.4
33,690 - +0.9
33,690 - -1.1
33,720 - -0.4
33,721 + +0.2
33,722 - +0.2
33,746 + -0.9
33,746 + +1.9
33,746 + +0.0
33,746 + -0.5
33,746 + +0.4
33,746 + +0.5
33,747 - +0.3
33,747 - -1.2
33,747 - +0.4
33,747 - +0.9
33,747 - +1.0
33,747 - -0.9
33,747 - -0.3
33,747 - +1.1
33,747 - +0.0
33,926 - +0.5
33,926 - +1.5
33,934 + +0.1
33,934 + +0.3
33,934 + +0.1
34,099 + GFF4050 0.15 -0.7
34,099 + GFF4050 0.15 -0.5
34,099 + GFF4050 0.15 -0.6
34,100 - GFF4050 0.15 -0.2
34,100 - GFF4050 0.15 -0.4
34,177 + GFF4050 0.19 +0.4
34,212 + GFF4050 0.21 -0.5
34,320 + GFF4050 0.26 -1.2
34,368 + GFF4050 0.29 +0.6
34,369 - GFF4050 0.29 +0.6
34,501 + GFF4050 0.35 +0.1
34,501 + GFF4050 0.35 +0.2
34,501 + GFF4050 0.35 -0.6
34,758 + GFF4050 0.48 +0.4
35,263 + GFF4050 0.73 -0.3
35,275 - GFF4050 0.73 -0.7
35,338 + GFF4050 0.76 +0.3
35,813 - +3.3
35,993 + GFF4051 0.75 -0.4
35,993 + GFF4051 0.75 -0.9
35,993 + GFF4051 0.75 +0.2
35,994 - GFF4051 0.76 +0.9
36,027 + -0.2
36,027 + +0.1
36,028 - -0.7
36,028 - +0.2
36,107 + +0.9
36,108 - +0.3
36,163 + GFF4052 0.14 -0.2
36,164 - GFF4052 0.14 +0.0
36,164 - GFF4052 0.14 -1.5
36,164 - GFF4052 0.14 -0.1
36,164 - GFF4052 0.14 +0.4
36,205 + GFF4052 0.18 +0.6
36,205 + GFF4052 0.18 -1.1
36,317 - GFF4052 0.31 +0.1
36,481 + GFF4052 0.49 -1.3
36,482 - GFF4052 0.49 +0.2
36,559 + GFF4052 0.58 -0.1
36,559 + GFF4052 0.58 +0.9
36,560 - GFF4052 0.58 -1.1
36,560 - GFF4052 0.58 +0.3
36,593 - GFF4052 0.61 +0.5
36,722 - GFF4052 0.76 +1.4

Or see this region's nucleotide sequence