Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3991 and GFF3992 are separated by 24 nucleotides GFF3992 and GFF3993 are separated by 310 nucleotides GFF3993 and GFF3994 are separated by 71 nucleotides
GFF3991 - hypothetical protein, at 363,133 to 364,143
GFF3991
GFF3992 - hypothetical protein, at 364,168 to 365,289
GFF3992
GFF3993 - putative acyl-CoA thioester hydrolase, at 365,600 to 365,992
GFF3993
GFF3994 - ATP-dependent RNA helicase HrpB, at 366,064 to 368,571
GFF3994
Position (kb) 364
365
366 Strain fitness (log2 ratio) -2
-1
0
1 at 364.141 kb on + strand at 364.238 kb on + strand at 364.238 kb on + strand at 364.239 kb on - strand at 364.349 kb on + strand, within GFF3992 at 364.349 kb on + strand, within GFF3992 at 364.350 kb on - strand, within GFF3992 at 364.484 kb on + strand, within GFF3992 at 364.484 kb on + strand, within GFF3992 at 364.485 kb on - strand, within GFF3992 at 364.626 kb on - strand, within GFF3992 at 364.652 kb on + strand, within GFF3992 at 364.679 kb on + strand, within GFF3992 at 364.872 kb on - strand, within GFF3992 at 364.872 kb on - strand, within GFF3992 at 364.940 kb on + strand, within GFF3992 at 364.997 kb on + strand, within GFF3992 at 365.022 kb on - strand, within GFF3992 at 365.162 kb on + strand, within GFF3992 at 365.163 kb on - strand, within GFF3992 at 365.399 kb on - strand at 365.669 kb on - strand, within GFF3993
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 364,141 + +1.2 364,238 + +0.0 364,238 + +1.1 364,239 - +0.2 364,349 + GFF3992 0.16 +0.0 364,349 + GFF3992 0.16 +0.8 364,350 - GFF3992 0.16 +1.2 364,484 + GFF3992 0.28 +0.6 364,484 + GFF3992 0.28 +0.0 364,485 - GFF3992 0.28 +0.4 364,626 - GFF3992 0.41 +0.3 364,652 + GFF3992 0.43 -0.2 364,679 + GFF3992 0.46 -0.3 364,872 - GFF3992 0.63 +0.1 364,872 - GFF3992 0.63 -0.2 364,940 + GFF3992 0.69 +0.6 364,997 + GFF3992 0.74 -1.9 365,022 - GFF3992 0.76 -0.4 365,162 + GFF3992 0.89 +0.3 365,163 - GFF3992 0.89 -1.0 365,399 - +0.5 365,669 - GFF3993 0.18 -0.7
Or see this region's nucleotide sequence