Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3982 and GFF3983 are separated by 206 nucleotides GFF3983 and GFF3984 are separated by 328 nucleotides GFF3984 and GFF3985 are separated by 29 nucleotides
GFF3982 - Ubiquinone hydroxylase UbiL, at 350,692 to 352,011
GFF3982
GFF3983 - Acyl-CoA thioesterase 2, at 352,218 to 353,093
GFF3983
GFF3984 - Nitrogen regulatory protein P-II 2, at 353,422 to 353,760
GFF3984
GFF3985 - Ammonia channel, at 353,790 to 355,286
GFF3985
Position (kb) 352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 352.071 kb on + strand at 352.413 kb on + strand, within GFF3983 at 352.414 kb on - strand, within GFF3983 at 352.452 kb on + strand, within GFF3983 at 352.453 kb on - strand, within GFF3983 at 352.453 kb on - strand, within GFF3983 at 352.536 kb on - strand, within GFF3983 at 352.536 kb on - strand, within GFF3983 at 352.731 kb on + strand, within GFF3983 at 352.825 kb on - strand, within GFF3983 at 353.092 kb on - strand at 353.146 kb on + strand at 353.146 kb on + strand at 353.147 kb on - strand at 353.573 kb on - strand, within GFF3984 at 353.860 kb on + strand at 354.012 kb on + strand, within GFF3985
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 352,071 + +1.1 352,413 + GFF3983 0.22 +0.4 352,414 - GFF3983 0.22 +0.4 352,452 + GFF3983 0.27 -1.3 352,453 - GFF3983 0.27 -0.5 352,453 - GFF3983 0.27 +0.7 352,536 - GFF3983 0.36 +0.4 352,536 - GFF3983 0.36 +0.7 352,731 + GFF3983 0.59 +0.2 352,825 - GFF3983 0.69 +1.0 353,092 - -0.1 353,146 + -0.5 353,146 + +0.4 353,147 - -0.2 353,573 - GFF3984 0.45 -3.2 353,860 + -0.6 354,012 + GFF3985 0.15 +0.7
Or see this region's nucleotide sequence