Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3919 and GFF3920 are separated by 140 nucleotides GFF3920 and GFF3921 are separated by 141 nucleotides GFF3921 and GFF3922 are separated by 43 nucleotides GFF3922 and GFF3923 are separated by 84 nucleotides
GFF3919 - hypothetical protein, at 288,386 to 289,309
GFF3919
GFF3920 - hypothetical protein, at 289,450 to 291,159
GFF3920
GFF3921 - Small heat shock protein IbpA, at 291,301 to 291,726
GFF3921
GFF3922 - hypothetical protein, at 291,770 to 292,036
GFF3922
GFF3923 - Nitrogen regulatory protein, at 292,121 to 292,585
GFF3923
Position (kb) 289
290
291
292 Strain fitness (log2 ratio) -2
-1
0
1 at 288.612 kb on - strand, within GFF3919 at 288.612 kb on - strand, within GFF3919 at 288.614 kb on - strand, within GFF3919 at 289.474 kb on + strand at 289.474 kb on + strand at 289.711 kb on + strand, within GFF3920 at 289.759 kb on + strand, within GFF3920 at 289.760 kb on - strand, within GFF3920 at 289.771 kb on + strand, within GFF3920 at 289.772 kb on - strand, within GFF3920 at 289.772 kb on - strand, within GFF3920 at 289.804 kb on + strand, within GFF3920 at 289.805 kb on - strand, within GFF3920 at 289.888 kb on + strand, within GFF3920 at 289.888 kb on + strand, within GFF3920 at 289.889 kb on - strand, within GFF3920 at 289.889 kb on - strand, within GFF3920 at 289.889 kb on - strand, within GFF3920 at 289.889 kb on - strand, within GFF3920 at 289.900 kb on + strand, within GFF3920 at 289.900 kb on + strand, within GFF3920 at 290.090 kb on - strand, within GFF3920 at 290.090 kb on - strand, within GFF3920 at 290.090 kb on - strand, within GFF3920 at 290.492 kb on + strand, within GFF3920 at 290.492 kb on + strand, within GFF3920 at 291.031 kb on + strand at 291.032 kb on - strand at 291.032 kb on - strand at 291.082 kb on + strand at 291.205 kb on + strand at 291.206 kb on - strand at 291.404 kb on - strand, within GFF3921 at 291.763 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 288,612 - GFF3919 0.24 +0.5 288,612 - GFF3919 0.24 +0.6 288,614 - GFF3919 0.25 -0.3 289,474 + +0.0 289,474 + +0.8 289,711 + GFF3920 0.15 -1.0 289,759 + GFF3920 0.18 -0.1 289,760 - GFF3920 0.18 +0.8 289,771 + GFF3920 0.19 -1.5 289,772 - GFF3920 0.19 -0.8 289,772 - GFF3920 0.19 +1.2 289,804 + GFF3920 0.21 +0.5 289,805 - GFF3920 0.21 -0.2 289,888 + GFF3920 0.26 -1.1 289,888 + GFF3920 0.26 -0.7 289,889 - GFF3920 0.26 -1.8 289,889 - GFF3920 0.26 -0.3 289,889 - GFF3920 0.26 +0.6 289,889 - GFF3920 0.26 -0.5 289,900 + GFF3920 0.26 -0.5 289,900 + GFF3920 0.26 +0.3 290,090 - GFF3920 0.37 +0.5 290,090 - GFF3920 0.37 +1.3 290,090 - GFF3920 0.37 +1.4 290,492 + GFF3920 0.61 +0.2 290,492 + GFF3920 0.61 +0.4 291,031 + -1.7 291,032 - +1.3 291,032 - -0.9 291,082 + -0.1 291,205 + -0.4 291,206 - +0.1 291,404 - GFF3921 0.24 -0.1 291,763 + +0.7
Or see this region's nucleotide sequence