Strain Fitness in Xanthobacter sp. DMC5 around GFF3916

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3915 and GFF3916 are separated by 184 nucleotidesGFF3916 and GFF3917 are separated by 293 nucleotidesGFF3917 and GFF3918 are separated by 12 nucleotides GFF3915 - Low affinity potassium transport system protein kup, at 283,571 to 285,457 GFF3915 GFF3916 - Inner membrane protein YbhN, at 285,642 to 286,685 GFF3916 GFF3917 - hypothetical protein, at 286,979 to 287,455 GFF3917 GFF3918 - hypothetical protein, at 287,468 to 288,220 GFF3918 Position (kb) 285 286 287Strain fitness (log2 ratio) -1 0 1 2at 284.950 kb on + strand, within GFF3915at 284.950 kb on + strand, within GFF3915at 285.213 kb on - strand, within GFF3915at 285.509 kb on + strandat 285.509 kb on + strandat 285.509 kb on + strandat 285.510 kb on - strandat 285.593 kb on + strandat 286.684 kb on - strandat 287.058 kb on - strand, within GFF3917at 287.235 kb on - strand, within GFF3917

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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284,950 + GFF3915 0.73 -1.1
284,950 + GFF3915 0.73 -0.7
285,213 - GFF3915 0.87 -0.3
285,509 + +1.8
285,509 + +0.3
285,509 + +1.5
285,510 - -0.4
285,593 + -0.8
286,684 - -0.1
287,058 - GFF3917 0.17 +0.7
287,235 - GFF3917 0.54 +1.1

Or see this region's nucleotide sequence