Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3886 and GFF3887 are separated by 15 nucleotides GFF3887 and GFF3888 are separated by 63 nucleotides GFF3888 and GFF3889 are separated by 222 nucleotides
GFF3886 - Folylpolyglutamate synthase, at 252,851 to 254,176
GFF3886
GFF3887 - Phosphogluconate dehydratase, at 254,192 to 256,027
GFF3887
GFF3888 - hypothetical protein, at 256,091 to 256,525
GFF3888
GFF3889 - hypothetical protein, at 256,748 to 257,272
GFF3889
Position (kb) 254
255
256
257 Strain fitness (log2 ratio) -1
0
1 at 254.866 kb on + strand, within GFF3887 at 254.868 kb on + strand, within GFF3887 at 254.869 kb on - strand, within GFF3887 at 254.869 kb on - strand, within GFF3887 at 254.969 kb on + strand, within GFF3887 at 255.340 kb on - strand, within GFF3887 at 255.420 kb on + strand, within GFF3887 at 255.760 kb on - strand, within GFF3887 at 255.787 kb on + strand, within GFF3887 at 255.790 kb on - strand, within GFF3887 at 255.790 kb on - strand, within GFF3887 at 255.943 kb on - strand at 256.092 kb on + strand at 256.092 kb on + strand at 256.092 kb on + strand at 256.093 kb on - strand at 256.093 kb on - strand at 256.093 kb on - strand at 256.093 kb on - strand at 256.398 kb on + strand, within GFF3888 at 256.398 kb on + strand, within GFF3888 at 256.398 kb on + strand, within GFF3888 at 256.399 kb on - strand, within GFF3888 at 256.399 kb on - strand, within GFF3888 at 256.826 kb on + strand, within GFF3889 at 256.827 kb on - strand, within GFF3889 at 256.828 kb on + strand, within GFF3889 at 256.829 kb on - strand, within GFF3889 at 256.829 kb on - strand, within GFF3889 at 256.836 kb on - strand, within GFF3889 at 257.009 kb on + strand, within GFF3889 at 257.010 kb on - strand, within GFF3889 at 257.010 kb on - strand, within GFF3889
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 254,866 + GFF3887 0.37 +1.3 254,868 + GFF3887 0.37 -0.1 254,869 - GFF3887 0.37 -0.9 254,869 - GFF3887 0.37 -0.3 254,969 + GFF3887 0.42 +0.4 255,340 - GFF3887 0.63 -0.3 255,420 + GFF3887 0.67 -0.2 255,760 - GFF3887 0.85 +1.0 255,787 + GFF3887 0.87 +0.4 255,790 - GFF3887 0.87 -0.7 255,790 - GFF3887 0.87 +0.5 255,943 - +0.1 256,092 + -0.5 256,092 + +0.5 256,092 + +0.5 256,093 - -0.0 256,093 - -0.9 256,093 - -1.4 256,093 - +0.3 256,398 + GFF3888 0.71 -0.4 256,398 + GFF3888 0.71 -0.2 256,398 + GFF3888 0.71 +0.9 256,399 - GFF3888 0.71 -0.8 256,399 - GFF3888 0.71 +0.6 256,826 + GFF3889 0.15 +1.1 256,827 - GFF3889 0.15 -0.8 256,828 + GFF3889 0.15 -1.2 256,829 - GFF3889 0.15 -0.7 256,829 - GFF3889 0.15 +0.0 256,836 - GFF3889 0.17 +0.1 257,009 + GFF3889 0.50 +1.1 257,010 - GFF3889 0.50 +0.5 257,010 - GFF3889 0.50 +0.4
Or see this region's nucleotide sequence