Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3862 and GFF3863 overlap by 4 nucleotides GFF3863 and GFF3864 are separated by 39 nucleotides GFF3864 and GFF3865 are separated by 213 nucleotides GFF3865 and GFF3866 overlap by 14 nucleotides
GFF3862 - hypothetical protein, at 229,023 to 229,889
GFF3862
GFF3863 - hypothetical protein, at 229,886 to 230,521
GFF3863
GFF3864 - Hypoxanthine phosphoribosyltransferase, at 230,561 to 231,097
GFF3864
GFF3865 - Cell division ATP-binding protein FtsE, at 231,311 to 231,970
GFF3865
GFF3866 - hypothetical protein, at 231,957 to 232,922
GFF3866
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 229.653 kb on + strand, within GFF3862 at 229.693 kb on - strand, within GFF3862 at 229.693 kb on - strand, within GFF3862 at 229.830 kb on + strand at 230.213 kb on + strand, within GFF3863 at 230.265 kb on - strand, within GFF3863 at 230.432 kb on + strand, within GFF3863 at 230.432 kb on + strand, within GFF3863 at 230.432 kb on + strand, within GFF3863 at 230.432 kb on + strand, within GFF3863 at 230.433 kb on - strand, within GFF3863 at 230.433 kb on - strand, within GFF3863 at 230.433 kb on - strand, within GFF3863 at 230.524 kb on + strand at 230.525 kb on - strand at 230.525 kb on - strand at 230.629 kb on - strand, within GFF3864
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 229,653 + GFF3862 0.73 -2.9 229,693 - GFF3862 0.77 -0.2 229,693 - GFF3862 0.77 -0.5 229,830 + -1.0 230,213 + GFF3863 0.51 -0.9 230,265 - GFF3863 0.60 +0.0 230,432 + GFF3863 0.86 -1.6 230,432 + GFF3863 0.86 -0.3 230,432 + GFF3863 0.86 -2.2 230,432 + GFF3863 0.86 -1.5 230,433 - GFF3863 0.86 -2.3 230,433 - GFF3863 0.86 -0.2 230,433 - GFF3863 0.86 -1.9 230,524 + +1.0 230,525 - -0.8 230,525 - -0.8 230,629 - GFF3864 0.13 +0.5
Or see this region's nucleotide sequence