Strain Fitness in Xanthobacter sp. DMC5 around GFF3842

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3841 and GFF3842 are separated by 1 nucleotidesGFF3842 and GFF3843 are separated by 19 nucleotides GFF3841 - UDP-N-acetylglucosamine 2-epimerase, at 202,601 to 203,758 GFF3841 GFF3842 - hypothetical protein, at 203,760 to 206,093 GFF3842 GFF3843 - hypothetical protein, at 206,113 to 208,233 GFF3843 Position (kb) 203 204 205 206 207Strain fitness (log2 ratio) -2 -1 0 1 2at 203.170 kb on + strand, within GFF3841at 203.170 kb on + strand, within GFF3841at 203.170 kb on + strand, within GFF3841at 203.366 kb on + strand, within GFF3841at 203.586 kb on - strand, within GFF3841at 203.594 kb on + strand, within GFF3841at 203.595 kb on - strand, within GFF3841at 203.615 kb on + strand, within GFF3841at 203.949 kb on + strandat 203.950 kb on - strandat 203.964 kb on + strandat 203.965 kb on - strandat 204.105 kb on + strand, within GFF3842at 204.106 kb on - strand, within GFF3842at 204.106 kb on - strand, within GFF3842at 204.106 kb on - strand, within GFF3842at 204.412 kb on - strand, within GFF3842at 204.412 kb on - strand, within GFF3842at 204.417 kb on + strand, within GFF3842at 204.417 kb on + strand, within GFF3842at 204.418 kb on - strand, within GFF3842at 204.516 kb on + strand, within GFF3842at 204.516 kb on + strand, within GFF3842at 204.516 kb on + strand, within GFF3842at 204.516 kb on + strand, within GFF3842at 204.517 kb on - strand, within GFF3842at 204.517 kb on - strand, within GFF3842at 204.517 kb on - strand, within GFF3842at 204.681 kb on + strand, within GFF3842at 204.681 kb on + strand, within GFF3842at 204.766 kb on + strand, within GFF3842at 204.766 kb on + strand, within GFF3842at 204.766 kb on + strand, within GFF3842at 204.767 kb on - strand, within GFF3842at 204.767 kb on - strand, within GFF3842at 205.315 kb on - strand, within GFF3842at 205.315 kb on - strand, within GFF3842at 205.315 kb on - strand, within GFF3842at 205.518 kb on + strand, within GFF3842at 205.519 kb on - strand, within GFF3842at 205.519 kb on - strand, within GFF3842at 205.519 kb on - strand, within GFF3842at 205.519 kb on - strand, within GFF3842at 206.075 kb on - strandat 206.122 kb on + strandat 206.123 kb on - strandat 206.147 kb on - strandat 206.234 kb on - strandat 206.251 kb on + strandat 206.384 kb on - strand, within GFF3843at 206.435 kb on - strand, within GFF3843at 206.435 kb on - strand, within GFF3843at 206.435 kb on - strand, within GFF3843at 206.455 kb on - strand, within GFF3843at 206.485 kb on + strand, within GFF3843at 206.485 kb on + strand, within GFF3843at 206.657 kb on - strand, within GFF3843at 206.746 kb on + strand, within GFF3843at 206.746 kb on + strand, within GFF3843at 206.746 kb on + strand, within GFF3843at 206.746 kb on + strand, within GFF3843at 206.746 kb on + strand, within GFF3843at 206.746 kb on + strand, within GFF3843at 206.747 kb on - strand, within GFF3843at 206.747 kb on - strand, within GFF3843at 206.747 kb on - strand, within GFF3843at 206.747 kb on - strand, within GFF3843at 206.747 kb on - strand, within GFF3843at 206.747 kb on - strand, within GFF3843at 206.917 kb on + strand, within GFF3843at 206.917 kb on + strand, within GFF3843at 206.918 kb on - strand, within GFF3843at 206.918 kb on - strand, within GFF3843at 206.918 kb on - strand, within GFF3843at 206.918 kb on - strand, within GFF3843at 206.918 kb on - strand, within GFF3843at 206.918 kb on - strand, within GFF3843at 206.918 kb on - strand, within GFF3843at 206.938 kb on + strand, within GFF3843at 206.939 kb on - strand, within GFF3843at 206.984 kb on - strand, within GFF3843at 206.984 kb on - strand, within GFF3843at 207.075 kb on + strand, within GFF3843

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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203,170 + GFF3841 0.49 +0.4
203,170 + GFF3841 0.49 +0.8
203,170 + GFF3841 0.49 +0.1
203,366 + GFF3841 0.66 +0.3
203,586 - GFF3841 0.85 +0.3
203,594 + GFF3841 0.86 +1.3
203,595 - GFF3841 0.86 +0.3
203,615 + GFF3841 0.88 +0.2
203,949 + +0.6
203,950 - -0.1
203,964 + -0.4
203,965 - +0.9
204,105 + GFF3842 0.15 -0.8
204,106 - GFF3842 0.15 -0.3
204,106 - GFF3842 0.15 +0.1
204,106 - GFF3842 0.15 +0.5
204,412 - GFF3842 0.28 +1.2
204,412 - GFF3842 0.28 -1.3
204,417 + GFF3842 0.28 -0.3
204,417 + GFF3842 0.28 +0.6
204,418 - GFF3842 0.28 -0.3
204,516 + GFF3842 0.32 -0.3
204,516 + GFF3842 0.32 +0.0
204,516 + GFF3842 0.32 +0.6
204,516 + GFF3842 0.32 -0.6
204,517 - GFF3842 0.32 +0.2
204,517 - GFF3842 0.32 +0.3
204,517 - GFF3842 0.32 -0.0
204,681 + GFF3842 0.39 -0.9
204,681 + GFF3842 0.39 +0.3
204,766 + GFF3842 0.43 -0.1
204,766 + GFF3842 0.43 +0.7
204,766 + GFF3842 0.43 +1.6
204,767 - GFF3842 0.43 +0.4
204,767 - GFF3842 0.43 -1.1
205,315 - GFF3842 0.67 -0.2
205,315 - GFF3842 0.67 -0.8
205,315 - GFF3842 0.67 +0.0
205,518 + GFF3842 0.75 -0.2
205,519 - GFF3842 0.75 -0.5
205,519 - GFF3842 0.75 -0.3
205,519 - GFF3842 0.75 +0.6
205,519 - GFF3842 0.75 +0.0
206,075 - -0.3
206,122 + -0.5
206,123 - +0.7
206,147 - -0.2
206,234 - +0.9
206,251 + -1.2
206,384 - GFF3843 0.13 +0.0
206,435 - GFF3843 0.15 +0.3
206,435 - GFF3843 0.15 +0.5
206,435 - GFF3843 0.15 -0.2
206,455 - GFF3843 0.16 -1.6
206,485 + GFF3843 0.18 +0.0
206,485 + GFF3843 0.18 +0.8
206,657 - GFF3843 0.26 -0.9
206,746 + GFF3843 0.30 +0.3
206,746 + GFF3843 0.30 -0.8
206,746 + GFF3843 0.30 +0.0
206,746 + GFF3843 0.30 -0.3
206,746 + GFF3843 0.30 +0.2
206,746 + GFF3843 0.30 -0.2
206,747 - GFF3843 0.30 +1.1
206,747 - GFF3843 0.30 -0.4
206,747 - GFF3843 0.30 -0.8
206,747 - GFF3843 0.30 +0.1
206,747 - GFF3843 0.30 +0.3
206,747 - GFF3843 0.30 -1.0
206,917 + GFF3843 0.38 -0.7
206,917 + GFF3843 0.38 +1.8
206,918 - GFF3843 0.38 +0.0
206,918 - GFF3843 0.38 +0.5
206,918 - GFF3843 0.38 +0.1
206,918 - GFF3843 0.38 -2.0
206,918 - GFF3843 0.38 -1.3
206,918 - GFF3843 0.38 +0.6
206,918 - GFF3843 0.38 +1.0
206,938 + GFF3843 0.39 +0.6
206,939 - GFF3843 0.39 +0.2
206,984 - GFF3843 0.41 +0.6
206,984 - GFF3843 0.41 -1.6
207,075 + GFF3843 0.45 -0.1

Or see this region's nucleotide sequence