Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3823 and GFF3824 overlap by 4 nucleotides GFF3824 and GFF3825 are separated by 43 nucleotides GFF3825 and GFF3826 are separated by 162 nucleotides GFF3826 and GFF3827 are separated by 184 nucleotides
GFF3823 - hypothetical protein, at 178,567 to 181,113
GFF3823
GFF3824 - putative ABC transporter ATP-binding protein, at 181,110 to 181,784
GFF3824
GFF3825 - hypothetical protein, at 181,828 to 182,553
GFF3825
GFF3826 - hypothetical protein, at 182,716 to 183,018
GFF3826
GFF3827 - Cytochrome c6, at 183,203 to 185,203
GFF3827
Position (kb) 181
182
183 Strain fitness (log2 ratio) -1
0
1 at 181.820 kb on + strand at 181.821 kb on - strand at 181.910 kb on + strand, within GFF3825 at 181.918 kb on - strand, within GFF3825 at 182.418 kb on + strand, within GFF3825 at 182.419 kb on - strand, within GFF3825 at 182.419 kb on - strand, within GFF3825 at 182.477 kb on + strand, within GFF3825 at 182.478 kb on - strand, within GFF3825 at 182.667 kb on + strand at 183.427 kb on - strand, within GFF3827
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 181,820 + -0.0 181,821 - -0.3 181,910 + GFF3825 0.11 +0.6 181,918 - GFF3825 0.12 +1.5 182,418 + GFF3825 0.81 +0.3 182,419 - GFF3825 0.81 -0.7 182,419 - GFF3825 0.81 +0.0 182,477 + GFF3825 0.89 -1.1 182,478 - GFF3825 0.90 -1.2 182,667 + +0.0 183,427 - GFF3827 0.11 +1.4
Or see this region's nucleotide sequence