Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3711 and GFF3712 are separated by 283 nucleotides GFF3712 and GFF3713 are separated by 88 nucleotides
GFF3711 - Coenzyme PQQ synthesis protein B, at 53,019 to 53,918
GFF3711
GFF3712 - Response regulator MprA, at 54,202 to 54,897
GFF3712
GFF3713 - Adaptive-response sensory-kinase SasA, at 54,986 to 56,635
GFF3713
Position (kb) 54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 53.344 kb on + strand, within GFF3711 at 53.345 kb on - strand, within GFF3711 at 53.376 kb on + strand, within GFF3711 at 53.377 kb on - strand, within GFF3711 at 53.377 kb on - strand, within GFF3711 at 53.377 kb on - strand, within GFF3711 at 53.377 kb on - strand, within GFF3711 at 53.593 kb on + strand, within GFF3711 at 53.594 kb on - strand, within GFF3711 at 53.594 kb on - strand, within GFF3711 at 53.637 kb on + strand, within GFF3711 at 53.638 kb on - strand, within GFF3711 at 53.764 kb on - strand, within GFF3711 at 53.988 kb on + strand at 54.081 kb on + strand at 54.308 kb on + strand, within GFF3712 at 54.317 kb on + strand, within GFF3712 at 54.317 kb on + strand, within GFF3712 at 54.318 kb on - strand, within GFF3712 at 54.605 kb on + strand, within GFF3712 at 54.605 kb on + strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.771 kb on - strand, within GFF3712 at 54.771 kb on - strand, within GFF3712 at 55.096 kb on + strand at 55.096 kb on + strand at 55.097 kb on - strand at 55.342 kb on + strand, within GFF3713 at 55.541 kb on + strand, within GFF3713 at 55.541 kb on + strand, within GFF3713 at 55.541 kb on + strand, within GFF3713 at 55.542 kb on - strand, within GFF3713 at 55.542 kb on - strand, within GFF3713
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 53,344 + GFF3711 0.36 -3.2 53,345 - GFF3711 0.36 -1.3 53,376 + GFF3711 0.40 -2.2 53,377 - GFF3711 0.40 -0.8 53,377 - GFF3711 0.40 -1.0 53,377 - GFF3711 0.40 -2.9 53,377 - GFF3711 0.40 -1.0 53,593 + GFF3711 0.64 -3.2 53,594 - GFF3711 0.64 -1.9 53,594 - GFF3711 0.64 -2.8 53,637 + GFF3711 0.69 -3.2 53,638 - GFF3711 0.69 -2.5 53,764 - GFF3711 0.83 +0.0 53,988 + -3.2 54,081 + -1.9 54,308 + GFF3712 0.15 -3.4 54,317 + GFF3712 0.17 -2.4 54,317 + GFF3712 0.17 -3.6 54,318 - GFF3712 0.17 -1.2 54,605 + GFF3712 0.58 -1.6 54,605 + GFF3712 0.58 -3.0 54,606 - GFF3712 0.58 -2.9 54,606 - GFF3712 0.58 -1.2 54,606 - GFF3712 0.58 -3.0 54,606 - GFF3712 0.58 -2.4 54,606 - GFF3712 0.58 -3.6 54,770 + GFF3712 0.82 -3.1 54,770 + GFF3712 0.82 -1.8 54,770 + GFF3712 0.82 -0.6 54,771 - GFF3712 0.82 -2.8 54,771 - GFF3712 0.82 -3.1 55,096 + -0.9 55,096 + -2.5 55,097 - -0.8 55,342 + GFF3713 0.22 -1.5 55,541 + GFF3713 0.34 -1.2 55,541 + GFF3713 0.34 -3.6 55,541 + GFF3713 0.34 -1.6 55,542 - GFF3713 0.34 -0.9 55,542 - GFF3713 0.34 -0.4
Or see this region's nucleotide sequence