Strain Fitness in Xanthobacter sp. DMC5 around GFF3668

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3666 and GFF3667 are separated by 6 nucleotidesGFF3667 and GFF3668 are separated by 16 nucleotidesGFF3668 and GFF3669 are separated by 210 nucleotides GFF3666 - hypothetical protein, at 5,065 to 5,991 GFF3666 GFF3667 - hypothetical protein, at 5,998 to 6,417 GFF3667 GFF3668 - hypothetical protein, at 6,434 to 8,032 GFF3668 GFF3669 - hypothetical protein, at 8,243 to 9,691 GFF3669 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 5.545 kb on + strand, within GFF3666at 5.545 kb on + strand, within GFF3666at 5.546 kb on - strand, within GFF3666at 5.546 kb on - strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.745 kb on + strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.990 kb on - strandat 5.990 kb on - strandat 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.674 kb on + strand, within GFF3668at 6.762 kb on - strand, within GFF3668at 6.762 kb on - strand, within GFF3668at 6.768 kb on - strand, within GFF3668at 6.774 kb on + strand, within GFF3668at 6.839 kb on - strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.847 kb on - strand, within GFF3668at 6.847 kb on - strand, within GFF3668at 6.851 kb on - strand, within GFF3668at 6.885 kb on + strand, within GFF3668at 6.886 kb on - strand, within GFF3668at 6.904 kb on + strand, within GFF3668at 6.904 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.953 kb on - strand, within GFF3668at 6.996 kb on + strand, within GFF3668at 7.034 kb on + strand, within GFF3668at 7.035 kb on - strand, within GFF3668at 7.035 kb on - strand, within GFF3668at 7.042 kb on + strand, within GFF3668at 7.042 kb on + strand, within GFF3668at 7.042 kb on + strand, within GFF3668at 7.043 kb on - strand, within GFF3668at 7.078 kb on - strand, within GFF3668at 7.078 kb on - strand, within GFF3668at 7.096 kb on + strand, within GFF3668at 7.096 kb on + strand, within GFF3668at 7.125 kb on + strand, within GFF3668at 7.125 kb on + strand, within GFF3668at 7.125 kb on + strand, within GFF3668at 7.126 kb on - strand, within GFF3668at 7.126 kb on - strand, within GFF3668at 7.126 kb on - strand, within GFF3668at 7.159 kb on + strand, within GFF3668at 7.159 kb on + strand, within GFF3668at 7.159 kb on + strand, within GFF3668at 7.160 kb on - strand, within GFF3668at 7.160 kb on - strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.268 kb on + strand, within GFF3668at 7.268 kb on + strand, within GFF3668at 7.408 kb on + strand, within GFF3668at 7.409 kb on - strand, within GFF3668at 7.418 kb on - strand, within GFF3668at 7.478 kb on + strand, within GFF3668at 7.478 kb on + strand, within GFF3668at 7.483 kb on + strand, within GFF3668at 7.483 kb on + strand, within GFF3668at 7.484 kb on - strand, within GFF3668at 7.484 kb on - strand, within GFF3668at 7.622 kb on + strand, within GFF3668at 7.631 kb on + strand, within GFF3668at 7.632 kb on - strand, within GFF3668at 7.794 kb on - strand, within GFF3668at 7.807 kb on + strand, within GFF3668at 7.808 kb on - strand, within GFF3668at 7.874 kb on + strandat 7.874 kb on + strandat 7.905 kb on - strandat 7.925 kb on + strandat 8.063 kb on + strandat 8.322 kb on + strandat 8.340 kb on + strandat 8.340 kb on + strandat 8.341 kb on - strandat 8.341 kb on - strandat 8.341 kb on - strandat 8.341 kb on - strandat 8.341 kb on - strandat 8.341 kb on - strandat 8.341 kb on - strandat 8.341 kb on - strandat 8.409 kb on + strand, within GFF3669at 8.409 kb on + strand, within GFF3669at 8.409 kb on + strand, within GFF3669at 8.409 kb on + strand, within GFF3669at 8.409 kb on + strand, within GFF3669at 8.409 kb on + strand, within GFF3669at 8.410 kb on - strand, within GFF3669at 8.410 kb on - strand, within GFF3669at 8.410 kb on - strand, within GFF3669at 8.410 kb on - strand, within GFF3669at 8.472 kb on + strand, within GFF3669at 8.472 kb on + strand, within GFF3669at 8.517 kb on + strand, within GFF3669at 8.517 kb on + strand, within GFF3669at 8.517 kb on + strand, within GFF3669at 8.517 kb on + strand, within GFF3669at 8.518 kb on - strand, within GFF3669at 8.518 kb on - strand, within GFF3669at 8.518 kb on - strand, within GFF3669at 8.518 kb on - strand, within GFF3669at 8.518 kb on - strand, within GFF3669at 8.518 kb on - strand, within GFF3669at 8.580 kb on + strand, within GFF3669at 8.580 kb on + strand, within GFF3669at 8.580 kb on + strand, within GFF3669at 8.581 kb on - strand, within GFF3669at 8.581 kb on - strand, within GFF3669at 8.581 kb on - strand, within GFF3669at 8.581 kb on - strand, within GFF3669at 8.581 kb on - strand, within GFF3669at 8.638 kb on - strand, within GFF3669at 8.664 kb on + strand, within GFF3669at 8.664 kb on + strand, within GFF3669at 8.665 kb on - strand, within GFF3669at 8.665 kb on - strand, within GFF3669at 8.665 kb on - strand, within GFF3669at 8.665 kb on - strand, within GFF3669at 8.665 kb on - strand, within GFF3669at 8.665 kb on - strand, within GFF3669

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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5,545 + GFF3666 0.52 +1.4
5,545 + GFF3666 0.52 -0.3
5,546 - GFF3666 0.52 +0.3
5,546 - GFF3666 0.52 +0.4
5,584 + GFF3666 0.56 -0.7
5,584 + GFF3666 0.56 -0.6
5,584 + GFF3666 0.56 -0.2
5,584 + GFF3666 0.56 -0.4
5,584 + GFF3666 0.56 -1.7
5,584 + GFF3666 0.56 +0.2
5,585 - GFF3666 0.56 +0.0
5,585 - GFF3666 0.56 +0.9
5,585 - GFF3666 0.56 +0.4
5,585 - GFF3666 0.56 -0.4
5,585 - GFF3666 0.56 +0.3
5,745 + GFF3666 0.73 -1.6
5,746 - GFF3666 0.73 +1.1
5,746 - GFF3666 0.73 +1.0
5,746 - GFF3666 0.73 -0.8
5,746 - GFF3666 0.73 +0.8
5,990 - -0.4
5,990 - +0.0
6,317 + GFF3667 0.76 +0.4
6,317 + GFF3667 0.76 -1.6
6,317 + GFF3667 0.76 -0.0
6,317 + GFF3667 0.76 -0.4
6,318 - GFF3667 0.76 +0.4
6,318 - GFF3667 0.76 +1.8
6,318 - GFF3667 0.76 -0.1
6,318 - GFF3667 0.76 +0.3
6,674 + GFF3668 0.15 +1.5
6,762 - GFF3668 0.21 +1.4
6,762 - GFF3668 0.21 -1.6
6,768 - GFF3668 0.21 -0.0
6,774 + GFF3668 0.21 +1.4
6,839 - GFF3668 0.25 +0.6
6,846 + GFF3668 0.26 -0.1
6,846 + GFF3668 0.26 +1.4
6,846 + GFF3668 0.26 -1.2
6,847 - GFF3668 0.26 -0.4
6,847 - GFF3668 0.26 -0.7
6,851 - GFF3668 0.26 +0.1
6,885 + GFF3668 0.28 -0.1
6,886 - GFF3668 0.28 +0.6
6,904 + GFF3668 0.29 +0.3
6,904 + GFF3668 0.29 +0.2
6,950 + GFF3668 0.32 -0.4
6,950 + GFF3668 0.32 -0.4
6,950 + GFF3668 0.32 +1.0
6,951 - GFF3668 0.32 +0.8
6,951 - GFF3668 0.32 +0.1
6,951 - GFF3668 0.32 -0.1
6,951 - GFF3668 0.32 -0.1
6,953 - GFF3668 0.32 -1.9
6,996 + GFF3668 0.35 +0.4
7,034 + GFF3668 0.38 -0.2
7,035 - GFF3668 0.38 -0.2
7,035 - GFF3668 0.38 -1.0
7,042 + GFF3668 0.38 +0.0
7,042 + GFF3668 0.38 +0.2
7,042 + GFF3668 0.38 +0.5
7,043 - GFF3668 0.38 -0.2
7,078 - GFF3668 0.40 +0.7
7,078 - GFF3668 0.40 +0.1
7,096 + GFF3668 0.41 +1.2
7,096 + GFF3668 0.41 -0.7
7,125 + GFF3668 0.43 +0.7
7,125 + GFF3668 0.43 +1.1
7,125 + GFF3668 0.43 +0.8
7,126 - GFF3668 0.43 -0.1
7,126 - GFF3668 0.43 +0.7
7,126 - GFF3668 0.43 +1.3
7,159 + GFF3668 0.45 -0.1
7,159 + GFF3668 0.45 -0.6
7,159 + GFF3668 0.45 +1.3
7,160 - GFF3668 0.45 +2.3
7,160 - GFF3668 0.45 -0.1
7,163 + GFF3668 0.46 +0.1
7,163 + GFF3668 0.46 +1.4
7,163 + GFF3668 0.46 -1.0
7,163 + GFF3668 0.46 -0.4
7,163 + GFF3668 0.46 +1.0
7,163 + GFF3668 0.46 +0.3
7,164 - GFF3668 0.46 -1.4
7,164 - GFF3668 0.46 -0.1
7,164 - GFF3668 0.46 +1.5
7,164 - GFF3668 0.46 +0.6
7,164 - GFF3668 0.46 -0.6
7,268 + GFF3668 0.52 +0.1
7,268 + GFF3668 0.52 +1.2
7,408 + GFF3668 0.61 -1.5
7,409 - GFF3668 0.61 -0.8
7,418 - GFF3668 0.62 +0.5
7,478 + GFF3668 0.65 +0.1
7,478 + GFF3668 0.65 +0.0
7,483 + GFF3668 0.66 +0.5
7,483 + GFF3668 0.66 +0.8
7,484 - GFF3668 0.66 -0.7
7,484 - GFF3668 0.66 +0.5
7,622 + GFF3668 0.74 +0.5
7,631 + GFF3668 0.75 +0.2
7,632 - GFF3668 0.75 +0.5
7,794 - GFF3668 0.85 -0.6
7,807 + GFF3668 0.86 +0.3
7,808 - GFF3668 0.86 +0.3
7,874 + -0.5
7,874 + -0.3
7,905 - +1.3
7,925 + -0.1
8,063 + +0.2
8,322 + +0.0
8,340 + -0.8
8,340 + +0.0
8,341 - -0.4
8,341 - -1.9
8,341 - -0.7
8,341 - +0.4
8,341 - +0.1
8,341 - -0.1
8,341 - -1.0
8,341 - +0.2
8,409 + GFF3669 0.11 +0.1
8,409 + GFF3669 0.11 -0.1
8,409 + GFF3669 0.11 +0.8
8,409 + GFF3669 0.11 -0.1
8,409 + GFF3669 0.11 -0.3
8,409 + GFF3669 0.11 -1.8
8,410 - GFF3669 0.12 -0.4
8,410 - GFF3669 0.12 -0.3
8,410 - GFF3669 0.12 +0.2
8,410 - GFF3669 0.12 +0.4
8,472 + GFF3669 0.16 +0.4
8,472 + GFF3669 0.16 -0.2
8,517 + GFF3669 0.19 +0.7
8,517 + GFF3669 0.19 +0.0
8,517 + GFF3669 0.19 +1.3
8,517 + GFF3669 0.19 +0.8
8,518 - GFF3669 0.19 +0.2
8,518 - GFF3669 0.19 -0.4
8,518 - GFF3669 0.19 +0.0
8,518 - GFF3669 0.19 -0.1
8,518 - GFF3669 0.19 +0.2
8,518 - GFF3669 0.19 +0.3
8,580 + GFF3669 0.23 -0.3
8,580 + GFF3669 0.23 -0.4
8,580 + GFF3669 0.23 +0.7
8,581 - GFF3669 0.23 +1.1
8,581 - GFF3669 0.23 +0.6
8,581 - GFF3669 0.23 +0.8
8,581 - GFF3669 0.23 +0.2
8,581 - GFF3669 0.23 +0.1
8,638 - GFF3669 0.27 -0.8
8,664 + GFF3669 0.29 -0.3
8,664 + GFF3669 0.29 +0.3
8,665 - GFF3669 0.29 -0.2
8,665 - GFF3669 0.29 -1.8
8,665 - GFF3669 0.29 +0.5
8,665 - GFF3669 0.29 +0.3
8,665 - GFF3669 0.29 -0.3
8,665 - GFF3669 0.29 -0.3

Or see this region's nucleotide sequence