Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3619 and GFF3620 overlap by 11 nucleotides GFF3620 and GFF3621 are separated by 613 nucleotides GFF3621 and GFF3622 are separated by 490 nucleotides
GFF3619 - hypothetical protein, at 484,606 to 485,007
GFF3619
GFF3620 - hypothetical protein, at 484,997 to 485,215
GFF3620
GFF3621 - Tyrosine recombinase XerC, at 485,829 to 487,133
GFF3621
GFF3622 - hypothetical protein, at 487,624 to 488,907
GFF3622
Position (kb) 485
486
487
488 Strain fitness (log2 ratio) -2
-1
0
1
2 at 485.020 kb on + strand, within GFF3620 at 485.020 kb on + strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.021 kb on - strand, within GFF3620 at 485.029 kb on + strand, within GFF3620 at 485.029 kb on + strand, within GFF3620 at 485.030 kb on - strand, within GFF3620 at 485.030 kb on - strand, within GFF3620 at 485.079 kb on + strand, within GFF3620 at 485.152 kb on + strand, within GFF3620 at 485.166 kb on + strand, within GFF3620 at 485.166 kb on + strand, within GFF3620 at 485.215 kb on + strand at 485.215 kb on + strand at 485.231 kb on - strand at 485.237 kb on + strand at 485.237 kb on + strand at 485.237 kb on + strand at 485.238 kb on - strand at 485.238 kb on - strand at 485.238 kb on - strand at 485.354 kb on - strand at 485.373 kb on + strand at 485.374 kb on - strand at 485.374 kb on - strand at 485.399 kb on + strand at 485.430 kb on + strand at 485.449 kb on + strand at 485.449 kb on + strand at 485.468 kb on - strand at 485.522 kb on - strand at 485.543 kb on - strand at 485.586 kb on + strand at 485.601 kb on + strand at 485.601 kb on + strand at 485.602 kb on - strand at 485.602 kb on - strand at 485.603 kb on + strand at 485.604 kb on - strand at 485.604 kb on - strand at 485.699 kb on + strand at 485.699 kb on + strand at 485.699 kb on + strand at 485.700 kb on - strand at 485.700 kb on - strand at 485.700 kb on - strand at 485.731 kb on + strand at 485.745 kb on + strand at 485.748 kb on - strand at 485.760 kb on + strand at 485.761 kb on - strand at 485.761 kb on - strand at 485.761 kb on - strand at 485.775 kb on + strand at 485.776 kb on - strand at 485.776 kb on - strand at 485.776 kb on - strand at 485.882 kb on - strand at 485.904 kb on + strand at 485.905 kb on - strand at 485.905 kb on - strand at 485.962 kb on + strand, within GFF3621 at 485.963 kb on - strand, within GFF3621 at 485.963 kb on - strand, within GFF3621 at 485.963 kb on - strand, within GFF3621 at 486.015 kb on + strand, within GFF3621 at 486.015 kb on + strand, within GFF3621 at 486.015 kb on + strand, within GFF3621 at 486.015 kb on + strand, within GFF3621 at 486.015 kb on + strand, within GFF3621 at 486.016 kb on - strand, within GFF3621 at 486.016 kb on - strand, within GFF3621 at 486.016 kb on - strand, within GFF3621 at 486.053 kb on + strand, within GFF3621 at 486.053 kb on + strand, within GFF3621 at 486.053 kb on + strand, within GFF3621 at 486.053 kb on + strand, within GFF3621 at 486.053 kb on + strand, within GFF3621 at 486.053 kb on + strand, within GFF3621 at 486.053 kb on + strand, within GFF3621 at 486.054 kb on - strand, within GFF3621 at 486.054 kb on - strand, within GFF3621 at 486.054 kb on - strand, within GFF3621 at 486.054 kb on - strand, within GFF3621 at 486.054 kb on - strand, within GFF3621 at 486.133 kb on + strand, within GFF3621 at 486.133 kb on + strand, within GFF3621 at 486.133 kb on + strand, within GFF3621 at 486.134 kb on - strand, within GFF3621 at 486.198 kb on + strand, within GFF3621 at 486.199 kb on - strand, within GFF3621 at 486.199 kb on - strand, within GFF3621 at 486.216 kb on + strand, within GFF3621 at 486.279 kb on + strand, within GFF3621 at 486.279 kb on + strand, within GFF3621 at 486.279 kb on + strand, within GFF3621 at 486.279 kb on + strand, within GFF3621 at 486.280 kb on - strand, within GFF3621 at 486.280 kb on - strand, within GFF3621 at 486.280 kb on - strand, within GFF3621 at 486.280 kb on - strand, within GFF3621 at 486.280 kb on - strand, within GFF3621 at 486.280 kb on - strand, within GFF3621 at 486.280 kb on - strand, within GFF3621 at 486.280 kb on - strand, within GFF3621 at 486.417 kb on + strand, within GFF3621 at 486.436 kb on + strand, within GFF3621 at 486.461 kb on + strand, within GFF3621 at 486.461 kb on + strand, within GFF3621 at 486.462 kb on - strand, within GFF3621 at 486.462 kb on - strand, within GFF3621 at 486.579 kb on + strand, within GFF3621 at 486.580 kb on - strand, within GFF3621 at 486.580 kb on - strand, within GFF3621 at 486.580 kb on - strand, within GFF3621 at 486.580 kb on - strand, within GFF3621 at 486.580 kb on - strand, within GFF3621 at 486.580 kb on - strand, within GFF3621 at 486.580 kb on - strand, within GFF3621 at 486.580 kb on - strand, within GFF3621 at 486.590 kb on + strand, within GFF3621 at 486.591 kb on - strand, within GFF3621 at 486.633 kb on + strand, within GFF3621 at 486.633 kb on + strand, within GFF3621 at 486.633 kb on + strand, within GFF3621 at 486.633 kb on + strand, within GFF3621 at 486.633 kb on + strand, within GFF3621 at 486.633 kb on + strand, within GFF3621 at 486.634 kb on - strand, within GFF3621 at 486.634 kb on - strand, within GFF3621 at 486.733 kb on + strand, within GFF3621 at 486.733 kb on + strand, within GFF3621 at 486.733 kb on + strand, within GFF3621 at 486.733 kb on + strand, within GFF3621 at 486.734 kb on - strand, within GFF3621 at 486.734 kb on - strand, within GFF3621 at 486.734 kb on - strand, within GFF3621 at 486.734 kb on - strand, within GFF3621 at 486.734 kb on - strand, within GFF3621 at 486.734 kb on - strand, within GFF3621 at 486.830 kb on + strand, within GFF3621 at 486.831 kb on - strand, within GFF3621 at 486.831 kb on - strand, within GFF3621 at 486.831 kb on - strand, within GFF3621 at 486.831 kb on - strand, within GFF3621 at 486.994 kb on + strand, within GFF3621 at 487.016 kb on + strand at 487.063 kb on + strand at 487.064 kb on - strand at 487.064 kb on - strand at 487.069 kb on + strand at 487.069 kb on + strand at 487.070 kb on - strand at 487.070 kb on - strand at 487.092 kb on + strand at 487.093 kb on - strand at 487.234 kb on - strand at 487.384 kb on + strand at 487.385 kb on - strand at 487.385 kb on - strand at 487.427 kb on + strand at 487.446 kb on + strand at 487.446 kb on + strand at 487.447 kb on - strand at 487.447 kb on - strand at 487.447 kb on - strand at 487.605 kb on + strand at 487.606 kb on - strand at 487.620 kb on + strand at 487.620 kb on + strand at 487.621 kb on - strand at 487.621 kb on - strand at 487.621 kb on - strand at 487.625 kb on + strand at 487.625 kb on + strand at 487.625 kb on + strand at 487.626 kb on - strand at 487.626 kb on - strand at 487.626 kb on - strand at 487.626 kb on - strand at 487.626 kb on - strand at 487.699 kb on + strand at 487.699 kb on + strand at 487.699 kb on + strand at 487.700 kb on - strand at 487.700 kb on - strand at 487.902 kb on + strand, within GFF3622 at 487.902 kb on + strand, within GFF3622 at 487.957 kb on + strand, within GFF3622 at 487.958 kb on - strand, within GFF3622 at 487.958 kb on - strand, within GFF3622 at 487.958 kb on - strand, within GFF3622 at 487.958 kb on - strand, within GFF3622 at 487.958 kb on - strand, within GFF3622 at 487.958 kb on - strand, within GFF3622 at 487.958 kb on - strand, within GFF3622 at 488.042 kb on + strand, within GFF3622 at 488.043 kb on - strand, within GFF3622
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 485,020 + GFF3620 0.11 +0.2 485,020 + GFF3620 0.11 -0.4 485,021 - GFF3620 0.11 +0.4 485,021 - GFF3620 0.11 +0.1 485,021 - GFF3620 0.11 +0.2 485,021 - GFF3620 0.11 -0.4 485,021 - GFF3620 0.11 -0.5 485,029 + GFF3620 0.15 -0.5 485,029 + GFF3620 0.15 -0.7 485,030 - GFF3620 0.15 -0.1 485,030 - GFF3620 0.15 +0.3 485,079 + GFF3620 0.37 +1.3 485,152 + GFF3620 0.71 -0.3 485,166 + GFF3620 0.77 +0.8 485,166 + GFF3620 0.77 -0.3 485,215 + -0.5 485,215 + +0.5 485,231 - +0.4 485,237 + -0.2 485,237 + +0.9 485,237 + +0.1 485,238 - -2.1 485,238 - -1.3 485,238 - +0.2 485,354 - -0.3 485,373 + +0.2 485,374 - -0.1 485,374 - +0.4 485,399 + -0.6 485,430 + +1.0 485,449 + -0.5 485,449 + -1.1 485,468 - -0.9 485,522 - -1.6 485,543 - +1.1 485,586 + +0.4 485,601 + -0.6 485,601 + -0.2 485,602 - -0.7 485,602 - +1.1 485,603 + -0.2 485,604 - +0.4 485,604 - +0.3 485,699 + +0.2 485,699 + -1.6 485,699 + +0.1 485,700 - +0.4 485,700 - -0.6 485,700 - +2.0 485,731 + +0.4 485,745 + -0.2 485,748 - -0.8 485,760 + -0.5 485,761 - -0.6 485,761 - -0.3 485,761 - +1.6 485,775 + +1.9 485,776 - -0.9 485,776 - -0.6 485,776 - +0.8 485,882 - +0.8 485,904 + +0.6 485,905 - -0.5 485,905 - -0.8 485,962 + GFF3621 0.10 +2.2 485,963 - GFF3621 0.10 +0.9 485,963 - GFF3621 0.10 +0.8 485,963 - GFF3621 0.10 -0.0 486,015 + GFF3621 0.14 +0.1 486,015 + GFF3621 0.14 -0.7 486,015 + GFF3621 0.14 +0.3 486,015 + GFF3621 0.14 -0.2 486,015 + GFF3621 0.14 +0.0 486,016 - GFF3621 0.14 -0.9 486,016 - GFF3621 0.14 -0.0 486,016 - GFF3621 0.14 -1.4 486,053 + GFF3621 0.17 +0.4 486,053 + GFF3621 0.17 -0.3 486,053 + GFF3621 0.17 -0.7 486,053 + GFF3621 0.17 +2.2 486,053 + GFF3621 0.17 -1.0 486,053 + GFF3621 0.17 +0.3 486,053 + GFF3621 0.17 +0.1 486,054 - GFF3621 0.17 +0.4 486,054 - GFF3621 0.17 -0.6 486,054 - GFF3621 0.17 +0.4 486,054 - GFF3621 0.17 +0.1 486,054 - GFF3621 0.17 +0.1 486,133 + GFF3621 0.23 +1.3 486,133 + GFF3621 0.23 -1.3 486,133 + GFF3621 0.23 -0.8 486,134 - GFF3621 0.23 -1.1 486,198 + GFF3621 0.28 -0.0 486,199 - GFF3621 0.28 -0.3 486,199 - GFF3621 0.28 -0.6 486,216 + GFF3621 0.30 -0.2 486,279 + GFF3621 0.34 -0.3 486,279 + GFF3621 0.34 -0.0 486,279 + GFF3621 0.34 +0.2 486,279 + GFF3621 0.34 -0.8 486,280 - GFF3621 0.35 +0.2 486,280 - GFF3621 0.35 -0.5 486,280 - GFF3621 0.35 -0.4 486,280 - GFF3621 0.35 +1.3 486,280 - GFF3621 0.35 -1.1 486,280 - GFF3621 0.35 +1.4 486,280 - GFF3621 0.35 +0.8 486,280 - GFF3621 0.35 -0.1 486,417 + GFF3621 0.45 +0.8 486,436 + GFF3621 0.47 -0.6 486,461 + GFF3621 0.48 +0.9 486,461 + GFF3621 0.48 -0.3 486,462 - GFF3621 0.49 +0.9 486,462 - GFF3621 0.49 +0.2 486,579 + GFF3621 0.57 +0.4 486,580 - GFF3621 0.58 -2.4 486,580 - GFF3621 0.58 +1.0 486,580 - GFF3621 0.58 -0.5 486,580 - GFF3621 0.58 -0.1 486,580 - GFF3621 0.58 -0.4 486,580 - GFF3621 0.58 +0.2 486,580 - GFF3621 0.58 -0.1 486,580 - GFF3621 0.58 +0.8 486,590 + GFF3621 0.58 +1.0 486,591 - GFF3621 0.58 -0.6 486,633 + GFF3621 0.62 +0.0 486,633 + GFF3621 0.62 -0.3 486,633 + GFF3621 0.62 -0.2 486,633 + GFF3621 0.62 +0.1 486,633 + GFF3621 0.62 -0.0 486,633 + GFF3621 0.62 -1.2 486,634 - GFF3621 0.62 -1.2 486,634 - GFF3621 0.62 -0.5 486,733 + GFF3621 0.69 -0.1 486,733 + GFF3621 0.69 -2.2 486,733 + GFF3621 0.69 -0.5 486,733 + GFF3621 0.69 +0.4 486,734 - GFF3621 0.69 +0.2 486,734 - GFF3621 0.69 -0.0 486,734 - GFF3621 0.69 -0.1 486,734 - GFF3621 0.69 +0.3 486,734 - GFF3621 0.69 -0.1 486,734 - GFF3621 0.69 -1.9 486,830 + GFF3621 0.77 +0.3 486,831 - GFF3621 0.77 +1.0 486,831 - GFF3621 0.77 -1.0 486,831 - GFF3621 0.77 +0.5 486,831 - GFF3621 0.77 +0.3 486,994 + GFF3621 0.89 +0.3 487,016 + +1.1 487,063 + -1.0 487,064 - -0.5 487,064 - +0.6 487,069 + -0.9 487,069 + -1.3 487,070 - +0.3 487,070 - -0.2 487,092 + -0.2 487,093 - +0.2 487,234 - -2.5 487,384 + +0.5 487,385 - +0.5 487,385 - +0.4 487,427 + -0.6 487,446 + -0.4 487,446 + +0.5 487,447 - -0.5 487,447 - +1.1 487,447 - +0.3 487,605 + -1.6 487,606 - +1.1 487,620 + -0.4 487,620 + +0.1 487,621 - -0.5 487,621 - +0.3 487,621 - +0.9 487,625 + -0.0 487,625 + -0.2 487,625 + +0.3 487,626 - +1.3 487,626 - -0.6 487,626 - -0.7 487,626 - -0.4 487,626 - +0.0 487,699 + +1.4 487,699 + -0.3 487,699 + -0.4 487,700 - +0.2 487,700 - -0.3 487,902 + GFF3622 0.22 -0.8 487,902 + GFF3622 0.22 -0.2 487,957 + GFF3622 0.26 -0.4 487,958 - GFF3622 0.26 -0.4 487,958 - GFF3622 0.26 -0.7 487,958 - GFF3622 0.26 -0.2 487,958 - GFF3622 0.26 +0.8 487,958 - GFF3622 0.26 +0.6 487,958 - GFF3622 0.26 +0.1 487,958 - GFF3622 0.26 -0.3 488,042 + GFF3622 0.33 -0.4 488,043 - GFF3622 0.33 +0.3
Or see this region's nucleotide sequence