Strain Fitness in Xanthobacter sp. DMC5 around GFF3606

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3604 and GFF3605 are separated by 2 nucleotidesGFF3605 and GFF3606 are separated by 370 nucleotidesGFF3606 and GFF3607 are separated by 102 nucleotides GFF3604 - hypothetical protein, at 466,353 to 466,805 GFF3604 GFF3605 - hypothetical protein, at 466,808 to 467,383 GFF3605 GFF3606 - hypothetical protein, at 467,754 to 468,341 GFF3606 GFF3607 - hypothetical protein, at 468,444 to 468,686 GFF3607 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2at 466.792 kb on + strandat 466.792 kb on + strandat 466.792 kb on + strandat 466.792 kb on + strandat 466.792 kb on + strandat 466.792 kb on + strandat 466.793 kb on - strandat 466.793 kb on - strandat 466.827 kb on + strandat 466.827 kb on + strandat 466.827 kb on + strandat 466.827 kb on + strandat 466.828 kb on - strandat 466.828 kb on - strandat 466.828 kb on - strandat 467.019 kb on + strand, within GFF3605at 467.019 kb on + strand, within GFF3605at 467.019 kb on + strand, within GFF3605at 467.019 kb on + strand, within GFF3605at 467.089 kb on - strand, within GFF3605at 467.089 kb on - strand, within GFF3605at 467.121 kb on + strand, within GFF3605at 467.121 kb on + strand, within GFF3605at 467.122 kb on - strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.293 kb on - strand, within GFF3605at 467.337 kb on + strandat 467.337 kb on + strandat 467.338 kb on - strandat 467.338 kb on - strandat 467.338 kb on - strandat 467.378 kb on - strandat 467.532 kb on + strandat 467.532 kb on + strandat 467.532 kb on + strandat 467.533 kb on - strandat 467.533 kb on - strandat 467.580 kb on - strandat 467.580 kb on - strandat 467.735 kb on + strandat 467.817 kb on + strand, within GFF3606at 467.879 kb on + strand, within GFF3606at 467.879 kb on + strand, within GFF3606at 467.944 kb on + strand, within GFF3606at 467.944 kb on + strand, within GFF3606at 467.944 kb on + strand, within GFF3606at 467.971 kb on + strand, within GFF3606at 467.971 kb on + strand, within GFF3606at 467.971 kb on + strand, within GFF3606at 468.097 kb on + strand, within GFF3606at 468.097 kb on + strand, within GFF3606at 468.097 kb on + strand, within GFF3606at 468.098 kb on - strand, within GFF3606at 468.187 kb on + strand, within GFF3606at 468.187 kb on + strand, within GFF3606at 468.187 kb on + strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.253 kb on + strand, within GFF3606at 468.277 kb on + strand, within GFF3606at 468.277 kb on + strand, within GFF3606at 468.278 kb on - strand, within GFF3606at 468.402 kb on + strandat 468.721 kb on + strandat 468.721 kb on + strandat 468.721 kb on + strandat 468.721 kb on + strandat 468.721 kb on + strandat 468.722 kb on - strandat 468.722 kb on - strandat 468.722 kb on - strandat 468.734 kb on + strandat 468.734 kb on + strandat 468.734 kb on + strandat 468.735 kb on - strandat 468.735 kb on - strandat 468.735 kb on - strandat 468.735 kb on - strandat 468.845 kb on - strandat 468.845 kb on - strandat 468.871 kb on + strandat 468.871 kb on + strandat 468.871 kb on + strandat 468.871 kb on + strandat 468.872 kb on - strandat 468.961 kb on + strandat 468.961 kb on + strandat 468.961 kb on + strandat 468.961 kb on + strandat 468.961 kb on + strandat 468.961 kb on + strandat 468.962 kb on - strandat 468.986 kb on + strandat 469.039 kb on - strandat 469.039 kb on - strandat 469.039 kb on - strandat 469.039 kb on - strandat 469.221 kb on + strandat 469.221 kb on + strandat 469.222 kb on - strandat 469.222 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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466,792 + +1.0
466,792 + -0.1
466,792 + +1.1
466,792 + -0.6
466,792 + +0.4
466,792 + -1.0
466,793 - -0.8
466,793 - -1.1
466,827 + -0.0
466,827 + +0.2
466,827 + +0.0
466,827 + +0.4
466,828 - -0.1
466,828 - +0.2
466,828 - +0.1
467,019 + GFF3605 0.37 -0.1
467,019 + GFF3605 0.37 +0.0
467,019 + GFF3605 0.37 -0.7
467,019 + GFF3605 0.37 +0.1
467,089 - GFF3605 0.49 -0.0
467,089 - GFF3605 0.49 +1.0
467,121 + GFF3605 0.54 -0.3
467,121 + GFF3605 0.54 +0.6
467,122 - GFF3605 0.55 -0.6
467,292 + GFF3605 0.84 +1.9
467,292 + GFF3605 0.84 -1.5
467,292 + GFF3605 0.84 -0.2
467,292 + GFF3605 0.84 +0.9
467,292 + GFF3605 0.84 +0.4
467,292 + GFF3605 0.84 -1.5
467,292 + GFF3605 0.84 -0.9
467,293 - GFF3605 0.84 -0.4
467,337 + +1.0
467,337 + +0.3
467,338 - +1.3
467,338 - +0.5
467,338 - +0.3
467,378 - -1.0
467,532 + -0.6
467,532 + -0.2
467,532 + +0.9
467,533 - -0.3
467,533 - +0.6
467,580 - -0.0
467,580 - +0.4
467,735 + +1.0
467,817 + GFF3606 0.11 -0.7
467,879 + GFF3606 0.21 -0.4
467,879 + GFF3606 0.21 +1.4
467,944 + GFF3606 0.32 -0.1
467,944 + GFF3606 0.32 -0.3
467,944 + GFF3606 0.32 +0.3
467,971 + GFF3606 0.37 -1.6
467,971 + GFF3606 0.37 -0.8
467,971 + GFF3606 0.37 +0.7
468,097 + GFF3606 0.58 -0.2
468,097 + GFF3606 0.58 +1.1
468,097 + GFF3606 0.58 +0.6
468,098 - GFF3606 0.59 -1.0
468,187 + GFF3606 0.74 -0.0
468,187 + GFF3606 0.74 -0.0
468,187 + GFF3606 0.74 -0.2
468,188 - GFF3606 0.74 -1.4
468,188 - GFF3606 0.74 +0.1
468,188 - GFF3606 0.74 +1.1
468,188 - GFF3606 0.74 +0.3
468,188 - GFF3606 0.74 +2.0
468,188 - GFF3606 0.74 +1.6
468,253 + GFF3606 0.85 +0.2
468,277 + GFF3606 0.89 -2.1
468,277 + GFF3606 0.89 -1.0
468,278 - GFF3606 0.89 +0.6
468,402 + +0.5
468,721 + +1.3
468,721 + +0.1
468,721 + -0.3
468,721 + +0.2
468,721 + +0.1
468,722 - -0.3
468,722 - -0.5
468,722 - +1.5
468,734 + +0.7
468,734 + -0.5
468,734 + -0.8
468,735 - +0.4
468,735 - -0.3
468,735 - -0.3
468,735 - -0.0
468,845 - -0.6
468,845 - +0.8
468,871 + +0.3
468,871 + -0.6
468,871 + +0.2
468,871 + -0.0
468,872 - -0.7
468,961 + -0.4
468,961 + -0.2
468,961 + -1.1
468,961 + +0.6
468,961 + +0.8
468,961 + -0.8
468,962 - -0.1
468,986 + +0.6
469,039 - -0.0
469,039 - +0.4
469,039 - -0.3
469,039 - -0.2
469,221 + -0.2
469,221 + -0.2
469,222 - +0.1
469,222 - -1.1

Or see this region's nucleotide sequence