Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3592 and GFF3593 are separated by 14 nucleotides GFF3593 and GFF3594 are separated by 60 nucleotides GFF3594 and GFF3595 are separated by 15 nucleotides
GFF3592 - hypothetical protein, at 452,652 to 453,338
GFF3592
GFF3593 - hypothetical protein, at 453,353 to 453,694
GFF3593
GFF3594 - Outer membrane protein A, at 453,755 to 454,774
GFF3594
GFF3595 - hypothetical protein, at 454,790 to 455,863
GFF3595
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1 at 452.971 kb on - strand, within GFF3592 at 452.971 kb on - strand, within GFF3592 at 453.416 kb on + strand, within GFF3593 at 453.416 kb on + strand, within GFF3593 at 453.416 kb on + strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.692 kb on + strand at 453.692 kb on + strand at 453.693 kb on - strand at 453.693 kb on - strand at 453.766 kb on + strand at 453.766 kb on + strand at 453.834 kb on + strand at 453.891 kb on + strand, within GFF3594 at 453.891 kb on + strand, within GFF3594 at 453.892 kb on - strand, within GFF3594 at 453.892 kb on - strand, within GFF3594 at 453.892 kb on - strand, within GFF3594 at 455.190 kb on + strand, within GFF3595 at 455.190 kb on + strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.451 kb on + strand, within GFF3595 at 455.451 kb on + strand, within GFF3595 at 455.451 kb on + strand, within GFF3595 at 455.451 kb on + strand, within GFF3595 at 455.452 kb on - strand, within GFF3595 at 455.452 kb on - strand, within GFF3595 at 455.452 kb on - strand, within GFF3595 at 455.626 kb on - strand, within GFF3595 at 455.658 kb on + strand, within GFF3595 at 455.658 kb on + strand, within GFF3595 at 455.658 kb on + strand, within GFF3595 at 455.659 kb on - strand, within GFF3595
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 452,971 - GFF3592 0.46 +0.8 452,971 - GFF3592 0.46 +0.6 453,416 + GFF3593 0.18 -0.5 453,416 + GFF3593 0.18 -0.9 453,416 + GFF3593 0.18 -0.3 453,417 - GFF3593 0.19 -0.5 453,417 - GFF3593 0.19 -2.5 453,417 - GFF3593 0.19 -0.9 453,417 - GFF3593 0.19 +0.2 453,417 - GFF3593 0.19 -0.1 453,417 - GFF3593 0.19 -0.0 453,417 - GFF3593 0.19 -0.0 453,417 - GFF3593 0.19 -0.9 453,692 + +1.1 453,692 + +0.5 453,693 - -1.2 453,693 - -0.2 453,766 + -0.6 453,766 + +0.4 453,834 + -1.5 453,891 + GFF3594 0.13 +0.2 453,891 + GFF3594 0.13 -1.0 453,892 - GFF3594 0.13 -0.3 453,892 - GFF3594 0.13 -0.6 453,892 - GFF3594 0.13 -0.1 455,190 + GFF3595 0.37 -0.4 455,190 + GFF3595 0.37 -0.6 455,191 - GFF3595 0.37 +0.0 455,191 - GFF3595 0.37 -0.1 455,191 - GFF3595 0.37 +0.4 455,191 - GFF3595 0.37 -1.4 455,191 - GFF3595 0.37 -0.1 455,451 + GFF3595 0.62 +0.4 455,451 + GFF3595 0.62 -1.3 455,451 + GFF3595 0.62 -0.0 455,451 + GFF3595 0.62 -1.0 455,452 - GFF3595 0.62 -0.3 455,452 - GFF3595 0.62 -1.0 455,452 - GFF3595 0.62 -0.0 455,626 - GFF3595 0.78 +0.6 455,658 + GFF3595 0.81 -0.7 455,658 + GFF3595 0.81 -0.6 455,658 + GFF3595 0.81 -0.1 455,659 - GFF3595 0.81 +0.1
Or see this region's nucleotide sequence