Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3569 and GFF3570 are separated by 259 nucleotides GFF3570 and GFF3571 are separated by 207 nucleotides GFF3571 and GFF3572 are separated by 63 nucleotides
GFF3569 - hypothetical protein, at 429,497 to 429,691
GFF3569
GFF3570 - L-carnitine dehydrogenase, at 429,951 to 430,460
GFF3570
GFF3571 - putative FAD-linked oxidoreductase, at 430,668 to 432,080
GFF3571
GFF3572 - hypothetical protein, at 432,144 to 436,118
GFF3572
Position (kb) 430
431
432
433 Strain fitness (log2 ratio) -1
0
1
2 at 429.680 kb on - strand at 429.680 kb on - strand at 429.736 kb on + strand at 429.738 kb on + strand at 429.738 kb on + strand at 429.803 kb on - strand at 429.822 kb on - strand at 429.921 kb on + strand at 429.921 kb on + strand at 429.922 kb on - strand at 430.044 kb on + strand, within GFF3570 at 430.177 kb on + strand, within GFF3570 at 430.177 kb on + strand, within GFF3570 at 430.286 kb on - strand, within GFF3570 at 430.348 kb on + strand, within GFF3570 at 430.349 kb on - strand, within GFF3570 at 430.351 kb on + strand, within GFF3570 at 430.352 kb on - strand, within GFF3570 at 430.352 kb on - strand, within GFF3570 at 430.374 kb on - strand, within GFF3570 at 430.375 kb on + strand, within GFF3570 at 430.376 kb on - strand, within GFF3570 at 430.519 kb on + strand at 430.519 kb on + strand at 430.665 kb on + strand at 430.806 kb on + strand at 430.806 kb on + strand at 430.806 kb on + strand at 430.806 kb on + strand at 430.806 kb on + strand at 431.283 kb on + strand, within GFF3571 at 431.284 kb on - strand, within GFF3571 at 431.284 kb on - strand, within GFF3571 at 431.337 kb on + strand, within GFF3571 at 431.448 kb on + strand, within GFF3571 at 431.670 kb on + strand, within GFF3571 at 431.671 kb on - strand, within GFF3571 at 431.889 kb on + strand, within GFF3571 at 431.930 kb on + strand, within GFF3571 at 431.930 kb on + strand, within GFF3571 at 431.931 kb on - strand, within GFF3571 at 431.973 kb on + strand at 432.097 kb on + strand at 432.115 kb on + strand at 432.178 kb on + strand at 432.190 kb on + strand at 432.190 kb on + strand at 432.454 kb on + strand at 432.455 kb on - strand at 432.780 kb on + strand, within GFF3572 at 432.781 kb on - strand, within GFF3572 at 432.781 kb on - strand, within GFF3572
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 429,680 - -1.1 429,680 - -1.5 429,736 + +0.5 429,738 + +0.6 429,738 + -1.7 429,803 - +0.2 429,822 - -0.5 429,921 + -0.7 429,921 + +0.8 429,922 - +1.7 430,044 + GFF3570 0.18 +0.3 430,177 + GFF3570 0.44 -1.2 430,177 + GFF3570 0.44 -1.2 430,286 - GFF3570 0.66 -0.1 430,348 + GFF3570 0.78 +1.7 430,349 - GFF3570 0.78 -0.8 430,351 + GFF3570 0.78 +1.3 430,352 - GFF3570 0.79 -0.3 430,352 - GFF3570 0.79 +0.5 430,374 - GFF3570 0.83 +0.0 430,375 + GFF3570 0.83 -0.4 430,376 - GFF3570 0.83 +0.7 430,519 + -0.6 430,519 + -0.2 430,665 + +0.3 430,806 + +0.7 430,806 + -0.3 430,806 + -0.2 430,806 + +1.8 430,806 + -0.4 431,283 + GFF3571 0.44 -0.4 431,284 - GFF3571 0.44 -0.8 431,284 - GFF3571 0.44 -0.0 431,337 + GFF3571 0.47 +0.4 431,448 + GFF3571 0.55 -0.6 431,670 + GFF3571 0.71 -0.9 431,671 - GFF3571 0.71 -0.1 431,889 + GFF3571 0.86 +0.4 431,930 + GFF3571 0.89 -0.1 431,930 + GFF3571 0.89 -0.1 431,931 - GFF3571 0.89 +0.8 431,973 + +0.4 432,097 + -1.4 432,115 + -0.6 432,178 + +0.5 432,190 + -0.5 432,190 + -0.4 432,454 + +1.0 432,455 - +0.7 432,780 + GFF3572 0.16 +0.2 432,781 - GFF3572 0.16 +0.6 432,781 - GFF3572 0.16 +0.3
Or see this region's nucleotide sequence