Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3549 and GFF3550 are separated by 113 nucleotides GFF3550 and GFF3551 overlap by 1 nucleotides GFF3551 and GFF3552 are separated by 45 nucleotides
GFF3549 - hypothetical protein, at 405,130 to 405,696
GFF3549
GFF3550 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 405,810 to 406,652
GFF3550
GFF3551 - Beta-lactamase OXA-18, at 406,652 to 407,500
GFF3551
GFF3552 - Inner membrane protein YdcO, at 407,546 to 408,691
GFF3552
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1 at 405.655 kb on + strand at 405.656 kb on - strand at 405.659 kb on + strand at 405.659 kb on + strand at 405.660 kb on - strand at 405.660 kb on - strand at 405.660 kb on - strand at 405.660 kb on - strand at 405.660 kb on - strand at 405.670 kb on + strand at 405.670 kb on + strand at 405.694 kb on + strand at 405.695 kb on - strand at 405.695 kb on - strand at 406.878 kb on - strand, within GFF3551 at 406.917 kb on - strand, within GFF3551 at 407.054 kb on + strand, within GFF3551 at 407.054 kb on + strand, within GFF3551 at 407.150 kb on - strand, within GFF3551 at 407.300 kb on + strand, within GFF3551 at 407.400 kb on - strand, within GFF3551 at 407.529 kb on + strand at 407.530 kb on - strand at 408.242 kb on + strand, within GFF3552 at 408.242 kb on + strand, within GFF3552 at 408.242 kb on + strand, within GFF3552 at 408.243 kb on - strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.407 kb on + strand, within GFF3552 at 408.408 kb on - strand, within GFF3552 at 408.419 kb on + strand, within GFF3552 at 408.419 kb on + strand, within GFF3552 at 408.419 kb on + strand, within GFF3552 at 408.420 kb on - strand, within GFF3552 at 408.420 kb on - strand, within GFF3552
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 405,655 + -0.4 405,656 - -0.4 405,659 + +0.2 405,659 + -1.1 405,660 - -0.0 405,660 - -2.4 405,660 - +0.7 405,660 - -1.0 405,660 - -1.7 405,670 + -0.9 405,670 + -0.3 405,694 + +1.4 405,695 - +0.4 405,695 - -1.2 406,878 - GFF3551 0.27 -0.9 406,917 - GFF3551 0.31 -0.5 407,054 + GFF3551 0.47 +0.4 407,054 + GFF3551 0.47 +0.2 407,150 - GFF3551 0.59 +0.8 407,300 + GFF3551 0.76 -0.3 407,400 - GFF3551 0.88 -1.1 407,529 + -0.9 407,530 - -0.1 408,242 + GFF3552 0.61 +1.7 408,242 + GFF3552 0.61 -0.3 408,242 + GFF3552 0.61 -1.0 408,243 - GFF3552 0.61 -0.3 408,407 + GFF3552 0.75 +0.0 408,407 + GFF3552 0.75 +1.3 408,407 + GFF3552 0.75 -1.2 408,407 + GFF3552 0.75 -0.5 408,407 + GFF3552 0.75 +0.6 408,408 - GFF3552 0.75 +0.4 408,419 + GFF3552 0.76 -0.0 408,419 + GFF3552 0.76 +0.1 408,419 + GFF3552 0.76 +0.0 408,420 - GFF3552 0.76 +0.7 408,420 - GFF3552 0.76 -0.2
Or see this region's nucleotide sequence