Strain Fitness in Xanthobacter sp. DMC5 around GFF3493

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3491 and GFF3492 are separated by 321 nucleotidesGFF3492 and GFF3493 overlap by 4 nucleotidesGFF3493 and GFF3494 are separated by 86 nucleotides GFF3491 - Transcriptional regulatory protein PhoP, at 347,140 to 347,811 GFF3491 GFF3492 - hypothetical protein, at 348,133 to 348,453 GFF3492 GFF3493 - hypothetical protein, at 348,450 to 349,298 GFF3493 GFF3494 - hypothetical protein, at 349,385 to 350,788 GFF3494 Position (kb) 348 349 350Strain fitness (log2 ratio) -2 -1 0 1at 347.520 kb on - strand, within GFF3491at 347.520 kb on - strand, within GFF3491at 347.520 kb on - strand, within GFF3491at 347.678 kb on + strand, within GFF3491at 347.678 kb on + strand, within GFF3491at 347.720 kb on + strand, within GFF3491at 347.720 kb on + strand, within GFF3491at 347.721 kb on - strand, within GFF3491at 347.739 kb on - strand, within GFF3491at 348.127 kb on + strandat 348.127 kb on + strandat 348.128 kb on - strandat 348.135 kb on - strandat 348.413 kb on + strand, within GFF3492at 349.045 kb on + strand, within GFF3493at 349.045 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.091 kb on - strand, within GFF3493at 349.091 kb on - strand, within GFF3493at 349.103 kb on - strand, within GFF3493at 349.103 kb on - strand, within GFF3493at 349.374 kb on + strandat 349.374 kb on + strandat 349.374 kb on + strandat 349.375 kb on - strandat 349.443 kb on + strandat 349.443 kb on + strandat 349.444 kb on - strandat 349.489 kb on - strandat 349.489 kb on - strandat 349.489 kb on - strandat 349.497 kb on + strandat 349.575 kb on + strand, within GFF3494at 349.647 kb on + strand, within GFF3494at 349.648 kb on - strand, within GFF3494at 349.694 kb on - strand, within GFF3494at 349.755 kb on + strand, within GFF3494at 349.755 kb on + strand, within GFF3494at 349.756 kb on - strand, within GFF3494at 349.756 kb on - strand, within GFF3494at 349.833 kb on + strand, within GFF3494at 349.833 kb on + strand, within GFF3494at 349.833 kb on + strand, within GFF3494at 349.834 kb on - strand, within GFF3494at 349.839 kb on + strand, within GFF3494at 349.839 kb on + strand, within GFF3494at 349.839 kb on + strand, within GFF3494at 349.839 kb on + strand, within GFF3494at 349.840 kb on - strand, within GFF3494at 349.840 kb on - strand, within GFF3494at 349.840 kb on - strand, within GFF3494at 349.840 kb on - strand, within GFF3494at 349.842 kb on + strand, within GFF3494at 349.842 kb on + strand, within GFF3494at 349.842 kb on + strand, within GFF3494at 349.842 kb on + strand, within GFF3494at 349.843 kb on - strand, within GFF3494at 349.900 kb on + strand, within GFF3494at 349.901 kb on - strand, within GFF3494at 349.901 kb on - strand, within GFF3494at 349.901 kb on - strand, within GFF3494at 349.901 kb on - strand, within GFF3494at 349.980 kb on + strand, within GFF3494at 349.980 kb on + strand, within GFF3494at 349.980 kb on + strand, within GFF3494at 349.981 kb on - strand, within GFF3494at 350.064 kb on + strand, within GFF3494at 350.064 kb on + strand, within GFF3494at 350.065 kb on - strand, within GFF3494at 350.065 kb on - strand, within GFF3494at 350.139 kb on + strand, within GFF3494at 350.143 kb on - strand, within GFF3494at 350.199 kb on + strand, within GFF3494at 350.200 kb on - strand, within GFF3494

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
347,520 - GFF3491 0.57 +0.5
347,520 - GFF3491 0.57 -0.1
347,520 - GFF3491 0.57 -0.8
347,678 + GFF3491 0.80 +1.2
347,678 + GFF3491 0.80 +0.7
347,720 + GFF3491 0.86 +0.5
347,720 + GFF3491 0.86 +0.4
347,721 - GFF3491 0.86 -0.9
347,739 - GFF3491 0.89 +1.2
348,127 + +1.0
348,127 + +1.7
348,128 - -0.9
348,135 - +0.3
348,413 + GFF3492 0.87 -0.4
349,045 + GFF3493 0.70 +0.9
349,045 + GFF3493 0.70 -1.8
349,090 + GFF3493 0.75 -0.6
349,090 + GFF3493 0.75 +0.3
349,090 + GFF3493 0.75 +1.2
349,091 - GFF3493 0.76 -0.4
349,091 - GFF3493 0.76 +0.1
349,103 - GFF3493 0.77 -0.0
349,103 - GFF3493 0.77 -0.9
349,374 + +0.7
349,374 + -0.3
349,374 + -1.5
349,375 - +0.6
349,443 + +0.0
349,443 + +0.2
349,444 - -0.4
349,489 - +0.4
349,489 - -2.4
349,489 - +0.5
349,497 + +0.2
349,575 + GFF3494 0.14 +0.1
349,647 + GFF3494 0.19 -0.8
349,648 - GFF3494 0.19 +0.7
349,694 - GFF3494 0.22 -1.5
349,755 + GFF3494 0.26 +0.9
349,755 + GFF3494 0.26 +0.1
349,756 - GFF3494 0.26 +0.4
349,756 - GFF3494 0.26 -0.2
349,833 + GFF3494 0.32 +0.8
349,833 + GFF3494 0.32 +0.4
349,833 + GFF3494 0.32 -0.3
349,834 - GFF3494 0.32 -0.2
349,839 + GFF3494 0.32 +1.0
349,839 + GFF3494 0.32 -0.3
349,839 + GFF3494 0.32 +0.8
349,839 + GFF3494 0.32 +0.7
349,840 - GFF3494 0.32 +0.3
349,840 - GFF3494 0.32 -0.1
349,840 - GFF3494 0.32 +0.7
349,840 - GFF3494 0.32 -0.7
349,842 + GFF3494 0.33 -0.5
349,842 + GFF3494 0.33 +0.1
349,842 + GFF3494 0.33 +0.3
349,842 + GFF3494 0.33 +0.6
349,843 - GFF3494 0.33 -0.1
349,900 + GFF3494 0.37 -0.5
349,901 - GFF3494 0.37 -0.1
349,901 - GFF3494 0.37 -0.3
349,901 - GFF3494 0.37 -0.4
349,901 - GFF3494 0.37 -1.1
349,980 + GFF3494 0.42 +0.2
349,980 + GFF3494 0.42 -0.0
349,980 + GFF3494 0.42 +0.1
349,981 - GFF3494 0.42 +0.1
350,064 + GFF3494 0.48 -0.1
350,064 + GFF3494 0.48 +1.4
350,065 - GFF3494 0.48 -0.5
350,065 - GFF3494 0.48 -0.9
350,139 + GFF3494 0.54 -0.3
350,143 - GFF3494 0.54 +0.2
350,199 + GFF3494 0.58 -1.6
350,200 - GFF3494 0.58 -0.1

Or see this region's nucleotide sequence