Strain Fitness in Xanthobacter sp. DMC5 around GFF3492

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3491 and GFF3492 are separated by 321 nucleotidesGFF3492 and GFF3493 overlap by 4 nucleotidesGFF3493 and GFF3494 are separated by 86 nucleotides GFF3491 - Transcriptional regulatory protein PhoP, at 347,140 to 347,811 GFF3491 GFF3492 - hypothetical protein, at 348,133 to 348,453 GFF3492 GFF3493 - hypothetical protein, at 348,450 to 349,298 GFF3493 GFF3494 - hypothetical protein, at 349,385 to 350,788 GFF3494 Position (kb) 348 349Strain fitness (log2 ratio) -2 -1 0 1at 347.276 kb on + strand, within GFF3491at 347.333 kb on + strand, within GFF3491at 347.520 kb on - strand, within GFF3491at 347.520 kb on - strand, within GFF3491at 347.520 kb on - strand, within GFF3491at 347.678 kb on + strand, within GFF3491at 347.678 kb on + strand, within GFF3491at 347.720 kb on + strand, within GFF3491at 347.720 kb on + strand, within GFF3491at 347.721 kb on - strand, within GFF3491at 347.739 kb on - strand, within GFF3491at 348.127 kb on + strandat 348.127 kb on + strandat 348.128 kb on - strandat 348.135 kb on - strandat 348.413 kb on + strand, within GFF3492at 349.045 kb on + strand, within GFF3493at 349.045 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.091 kb on - strand, within GFF3493at 349.091 kb on - strand, within GFF3493at 349.103 kb on - strand, within GFF3493at 349.103 kb on - strand, within GFF3493at 349.374 kb on + strandat 349.374 kb on + strandat 349.374 kb on + strandat 349.375 kb on - strandat 349.443 kb on + strandat 349.443 kb on + strandat 349.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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347,276 + GFF3491 0.20 +0.2
347,333 + GFF3491 0.29 +0.3
347,520 - GFF3491 0.57 +0.5
347,520 - GFF3491 0.57 -0.1
347,520 - GFF3491 0.57 -0.8
347,678 + GFF3491 0.80 +1.2
347,678 + GFF3491 0.80 +0.7
347,720 + GFF3491 0.86 +0.5
347,720 + GFF3491 0.86 +0.4
347,721 - GFF3491 0.86 -0.9
347,739 - GFF3491 0.89 +1.2
348,127 + +1.0
348,127 + +1.7
348,128 - -0.9
348,135 - +0.3
348,413 + GFF3492 0.87 -0.4
349,045 + GFF3493 0.70 +0.9
349,045 + GFF3493 0.70 -1.8
349,090 + GFF3493 0.75 -0.6
349,090 + GFF3493 0.75 +0.3
349,090 + GFF3493 0.75 +1.2
349,091 - GFF3493 0.76 -0.4
349,091 - GFF3493 0.76 +0.1
349,103 - GFF3493 0.77 -0.0
349,103 - GFF3493 0.77 -0.9
349,374 + +0.7
349,374 + -0.3
349,374 + -1.5
349,375 - +0.6
349,443 + +0.0
349,443 + +0.2
349,444 - -0.4

Or see this region's nucleotide sequence