Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3457 and GFF3458 overlap by 4 nucleotides GFF3458 and GFF3459 are separated by 106 nucleotides GFF3459 and GFF3460 are separated by 19 nucleotides
GFF3457 - Shikimate dehydrogenase (NADP(+)), at 308,449 to 309,288
GFF3457
GFF3458 - NAD-dependent glycerol dehydrogenase, at 309,285 to 310,037
GFF3458
GFF3459 - 1-deoxy-D-xylulose-5-phosphate synthase, at 310,144 to 312,345
GFF3459
GFF3460 - Alcohol dehydrogenase [acceptor], at 312,365 to 313,969
GFF3460
Position (kb) 310
311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 309.495 kb on + strand, within GFF3458 at 309.702 kb on + strand, within GFF3458 at 309.702 kb on + strand, within GFF3458 at 309.702 kb on + strand, within GFF3458 at 309.702 kb on + strand, within GFF3458 at 309.702 kb on + strand, within GFF3458 at 309.703 kb on - strand, within GFF3458 at 309.703 kb on - strand, within GFF3458 at 309.703 kb on - strand, within GFF3458 at 309.832 kb on - strand, within GFF3458 at 309.832 kb on - strand, within GFF3458 at 310.023 kb on + strand at 310.024 kb on - strand at 310.192 kb on - strand at 310.694 kb on - strand, within GFF3459 at 310.716 kb on + strand, within GFF3459 at 310.795 kb on + strand, within GFF3459 at 310.795 kb on + strand, within GFF3459 at 310.796 kb on - strand, within GFF3459 at 310.796 kb on - strand, within GFF3459 at 310.981 kb on + strand, within GFF3459 at 310.981 kb on + strand, within GFF3459 at 310.982 kb on - strand, within GFF3459 at 310.982 kb on - strand, within GFF3459 at 310.982 kb on - strand, within GFF3459 at 310.987 kb on + strand, within GFF3459 at 310.987 kb on + strand, within GFF3459 at 310.987 kb on + strand, within GFF3459 at 310.987 kb on + strand, within GFF3459 at 310.988 kb on - strand, within GFF3459 at 310.988 kb on - strand, within GFF3459 at 310.988 kb on - strand, within GFF3459 at 311.030 kb on - strand, within GFF3459 at 311.572 kb on + strand, within GFF3459 at 311.785 kb on + strand, within GFF3459 at 311.893 kb on + strand, within GFF3459 at 311.893 kb on + strand, within GFF3459 at 311.893 kb on + strand, within GFF3459 at 311.894 kb on - strand, within GFF3459 at 311.894 kb on - strand, within GFF3459 at 311.894 kb on - strand, within GFF3459 at 311.894 kb on - strand, within GFF3459 at 311.956 kb on + strand, within GFF3459 at 311.956 kb on + strand, within GFF3459 at 312.344 kb on - strand at 312.380 kb on + strand at 312.578 kb on + strand, within GFF3460 at 312.579 kb on - strand, within GFF3460 at 312.579 kb on - strand, within GFF3460 at 312.728 kb on + strand, within GFF3460 at 312.728 kb on + strand, within GFF3460 at 312.729 kb on - strand, within GFF3460 at 312.888 kb on - strand, within GFF3460 at 312.918 kb on - strand, within GFF3460 at 312.920 kb on + strand, within GFF3460 at 312.920 kb on + strand, within GFF3460 at 312.920 kb on + strand, within GFF3460 at 312.921 kb on - strand, within GFF3460 at 312.921 kb on - strand, within GFF3460 at 312.968 kb on + strand, within GFF3460 at 312.969 kb on - strand, within GFF3460
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 309,495 + GFF3458 0.28 -1.1 309,702 + GFF3458 0.55 -0.6 309,702 + GFF3458 0.55 -3.0 309,702 + GFF3458 0.55 -1.3 309,702 + GFF3458 0.55 -0.1 309,702 + GFF3458 0.55 -0.0 309,703 - GFF3458 0.56 +1.1 309,703 - GFF3458 0.56 -0.7 309,703 - GFF3458 0.56 -0.8 309,832 - GFF3458 0.73 +0.1 309,832 - GFF3458 0.73 +0.0 310,023 + +0.7 310,024 - +0.0 310,192 - +0.0 310,694 - GFF3459 0.25 -0.8 310,716 + GFF3459 0.26 +0.4 310,795 + GFF3459 0.30 +0.0 310,795 + GFF3459 0.30 +0.4 310,796 - GFF3459 0.30 +0.1 310,796 - GFF3459 0.30 +0.6 310,981 + GFF3459 0.38 -0.4 310,981 + GFF3459 0.38 -0.4 310,982 - GFF3459 0.38 -0.2 310,982 - GFF3459 0.38 -0.7 310,982 - GFF3459 0.38 -0.6 310,987 + GFF3459 0.38 +0.0 310,987 + GFF3459 0.38 +0.4 310,987 + GFF3459 0.38 +0.2 310,987 + GFF3459 0.38 -0.9 310,988 - GFF3459 0.38 +0.5 310,988 - GFF3459 0.38 -0.3 310,988 - GFF3459 0.38 -0.4 311,030 - GFF3459 0.40 -0.0 311,572 + GFF3459 0.65 +0.7 311,785 + GFF3459 0.75 +0.2 311,893 + GFF3459 0.79 +0.6 311,893 + GFF3459 0.79 -0.2 311,893 + GFF3459 0.79 +0.2 311,894 - GFF3459 0.79 +0.9 311,894 - GFF3459 0.79 -0.0 311,894 - GFF3459 0.79 -0.4 311,894 - GFF3459 0.79 -0.5 311,956 + GFF3459 0.82 -0.3 311,956 + GFF3459 0.82 -1.1 312,344 - +0.3 312,380 + +0.8 312,578 + GFF3460 0.13 -0.2 312,579 - GFF3460 0.13 +0.3 312,579 - GFF3460 0.13 -0.3 312,728 + GFF3460 0.23 +0.2 312,728 + GFF3460 0.23 +0.5 312,729 - GFF3460 0.23 +1.2 312,888 - GFF3460 0.33 +0.1 312,918 - GFF3460 0.34 -0.9 312,920 + GFF3460 0.35 -1.0 312,920 + GFF3460 0.35 +0.0 312,920 + GFF3460 0.35 -0.3 312,921 - GFF3460 0.35 -1.9 312,921 - GFF3460 0.35 -0.2 312,968 + GFF3460 0.38 -0.0 312,969 - GFF3460 0.38 +0.1
Or see this region's nucleotide sequence