Strain Fitness in Xanthobacter sp. DMC5 around GFF344

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF341 and GFF342 are separated by 118 nucleotidesGFF342 and GFF343 overlap by 20 nucleotidesGFF343 and GFF344 overlap by 11 nucleotidesGFF344 and GFF345 are separated by 282 nucleotides GFF341 - hypothetical protein, at 346,739 to 347,107 GFF341 GFF342 - hypothetical protein, at 347,226 to 347,552 GFF342 GFF343 - hypothetical protein, at 347,533 to 347,757 GFF343 GFF344 - Chaperone protein HtpG, at 347,747 to 350,356 GFF344 GFF345 - hypothetical protein, at 350,639 to 351,358 GFF345 Position (kb) 347 348 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 347.044 kb on + strand, within GFF341at 347.105 kb on + strandat 347.105 kb on + strandat 347.106 kb on - strandat 347.106 kb on - strandat 347.106 kb on - strandat 347.106 kb on - strandat 347.112 kb on + strandat 347.112 kb on + strandat 347.422 kb on + strand, within GFF342at 347.422 kb on + strand, within GFF342at 347.423 kb on - strand, within GFF342at 347.423 kb on - strand, within GFF342at 347.550 kb on + strandat 347.550 kb on + strandat 347.551 kb on - strandat 347.806 kb on - strandat 347.824 kb on + strandat 347.824 kb on + strandat 347.825 kb on - strandat 347.825 kb on - strandat 347.868 kb on + strandat 347.868 kb on + strandat 347.869 kb on - strandat 347.907 kb on - strandat 347.907 kb on - strandat 347.909 kb on + strandat 347.910 kb on - strandat 347.910 kb on - strandat 347.955 kb on - strandat 347.955 kb on - strandat 347.964 kb on - strandat 347.995 kb on + strandat 348.128 kb on + strand, within GFF344at 348.255 kb on + strand, within GFF344at 348.255 kb on + strand, within GFF344at 348.260 kb on + strand, within GFF344at 348.260 kb on + strand, within GFF344at 348.261 kb on - strand, within GFF344at 348.261 kb on - strand, within GFF344at 348.261 kb on - strand, within GFF344at 348.261 kb on - strand, within GFF344at 348.358 kb on + strand, within GFF344at 348.359 kb on - strand, within GFF344at 348.423 kb on + strand, within GFF344at 348.424 kb on - strand, within GFF344at 348.424 kb on - strand, within GFF344at 348.424 kb on - strand, within GFF344at 348.427 kb on - strand, within GFF344at 348.486 kb on - strand, within GFF344at 348.486 kb on - strand, within GFF344at 348.486 kb on - strand, within GFF344at 348.486 kb on - strand, within GFF344at 348.521 kb on - strand, within GFF344at 348.569 kb on - strand, within GFF344at 348.569 kb on - strand, within GFF344at 348.569 kb on - strand, within GFF344at 348.602 kb on - strand, within GFF344at 348.615 kb on - strand, within GFF344at 348.679 kb on + strand, within GFF344at 348.752 kb on - strand, within GFF344at 348.752 kb on - strand, within GFF344at 348.757 kb on + strand, within GFF344at 348.835 kb on - strand, within GFF344at 349.008 kb on + strand, within GFF344at 349.009 kb on - strand, within GFF344at 349.072 kb on + strand, within GFF344at 349.073 kb on - strand, within GFF344at 349.073 kb on - strand, within GFF344at 349.099 kb on + strand, within GFF344at 349.254 kb on + strand, within GFF344at 349.271 kb on + strand, within GFF344at 349.272 kb on - strand, within GFF344at 349.293 kb on - strand, within GFF344at 349.293 kb on - strand, within GFF344at 349.345 kb on + strand, within GFF344at 349.349 kb on + strand, within GFF344at 349.379 kb on + strand, within GFF344at 349.426 kb on + strand, within GFF344at 349.430 kb on + strand, within GFF344at 349.430 kb on + strand, within GFF344at 349.431 kb on - strand, within GFF344at 349.463 kb on - strand, within GFF344at 349.468 kb on + strand, within GFF344at 349.469 kb on - strand, within GFF344at 349.469 kb on - strand, within GFF344at 349.469 kb on - strand, within GFF344at 349.469 kb on - strand, within GFF344at 349.475 kb on - strand, within GFF344at 349.475 kb on - strand, within GFF344at 349.514 kb on - strand, within GFF344at 349.569 kb on - strand, within GFF344at 349.602 kb on + strand, within GFF344at 349.602 kb on + strand, within GFF344at 349.603 kb on - strand, within GFF344at 349.661 kb on + strand, within GFF344at 349.685 kb on + strand, within GFF344at 349.685 kb on + strand, within GFF344at 349.686 kb on - strand, within GFF344at 349.686 kb on - strand, within GFF344at 349.702 kb on + strand, within GFF344at 349.702 kb on + strand, within GFF344at 349.703 kb on - strand, within GFF344at 349.712 kb on + strand, within GFF344at 349.713 kb on - strand, within GFF344at 349.756 kb on + strand, within GFF344at 349.757 kb on - strand, within GFF344at 349.757 kb on - strand, within GFF344at 349.757 kb on - strand, within GFF344at 349.843 kb on + strand, within GFF344at 349.844 kb on - strand, within GFF344at 349.844 kb on - strand, within GFF344at 349.918 kb on + strand, within GFF344at 349.918 kb on + strand, within GFF344at 349.918 kb on + strand, within GFF344at 349.918 kb on + strand, within GFF344at 349.918 kb on + strand, within GFF344at 349.918 kb on + strand, within GFF344at 349.919 kb on - strand, within GFF344at 349.919 kb on - strand, within GFF344at 349.957 kb on + strand, within GFF344at 349.958 kb on - strand, within GFF344at 349.984 kb on + strand, within GFF344at 349.984 kb on + strand, within GFF344at 349.985 kb on - strand, within GFF344at 350.050 kb on - strand, within GFF344at 350.099 kb on + strandat 350.099 kb on + strandat 350.099 kb on + strandat 350.100 kb on - strandat 350.100 kb on - strandat 350.104 kb on - strandat 350.195 kb on - strandat 350.196 kb on + strandat 350.196 kb on + strandat 350.211 kb on - strandat 350.239 kb on + strandat 350.481 kb on - strandat 350.536 kb on + strandat 350.537 kb on - strandat 350.616 kb on + strandat 350.616 kb on + strandat 350.617 kb on - strandat 350.617 kb on - strandat 350.617 kb on - strandat 350.617 kb on - strandat 350.617 kb on - strandat 350.641 kb on - strandat 350.786 kb on - strand, within GFF345at 350.852 kb on + strand, within GFF345at 350.852 kb on + strand, within GFF345at 350.853 kb on - strand, within GFF345at 350.965 kb on + strand, within GFF345at 350.966 kb on - strand, within GFF345at 351.246 kb on + strand, within GFF345at 351.246 kb on + strand, within GFF345at 351.247 kb on - strand, within GFF345at 351.247 kb on - strand, within GFF345at 351.309 kb on - strandat 351.309 kb on - strandat 351.343 kb on + strandat 351.343 kb on + strandat 351.345 kb on + strandat 351.345 kb on + strandat 351.345 kb on + strandat 351.346 kb on - strandat 351.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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347,044 + GFF341 0.83 +0.4
347,105 + -1.0
347,105 + +1.2
347,106 - -0.4
347,106 - -0.3
347,106 - +1.0
347,106 - +0.1
347,112 + +0.5
347,112 + +0.4
347,422 + GFF342 0.60 -0.5
347,422 + GFF342 0.60 +0.7
347,423 - GFF342 0.60 +0.7
347,423 - GFF342 0.60 +0.2
347,550 + +1.0
347,550 + +1.2
347,551 - +1.2
347,806 - +0.1
347,824 + +0.2
347,824 + -0.1
347,825 - +0.2
347,825 - -0.1
347,868 + +0.2
347,868 + +0.0
347,869 - +2.2
347,907 - -0.5
347,907 - +1.3
347,909 + +1.4
347,910 - -0.4
347,910 - +0.5
347,955 - +0.5
347,955 - +0.6
347,964 - +1.0
347,995 + +0.6
348,128 + GFF344 0.15 -0.4
348,255 + GFF344 0.19 +0.4
348,255 + GFF344 0.19 +2.2
348,260 + GFF344 0.20 -0.3
348,260 + GFF344 0.20 +0.1
348,261 - GFF344 0.20 +0.8
348,261 - GFF344 0.20 -0.7
348,261 - GFF344 0.20 +1.9
348,261 - GFF344 0.20 +1.1
348,358 + GFF344 0.23 -0.2
348,359 - GFF344 0.23 +0.0
348,423 + GFF344 0.26 -0.7
348,424 - GFF344 0.26 +1.3
348,424 - GFF344 0.26 -1.0
348,424 - GFF344 0.26 +0.5
348,427 - GFF344 0.26 +0.6
348,486 - GFF344 0.28 +0.2
348,486 - GFF344 0.28 -0.7
348,486 - GFF344 0.28 +0.8
348,486 - GFF344 0.28 +0.5
348,521 - GFF344 0.30 +0.2
348,569 - GFF344 0.31 +0.3
348,569 - GFF344 0.31 +0.6
348,569 - GFF344 0.31 -2.3
348,602 - GFF344 0.33 -0.9
348,615 - GFF344 0.33 +0.8
348,679 + GFF344 0.36 +0.6
348,752 - GFF344 0.39 -0.3
348,752 - GFF344 0.39 -1.1
348,757 + GFF344 0.39 +1.5
348,835 - GFF344 0.42 +0.2
349,008 + GFF344 0.48 -0.4
349,009 - GFF344 0.48 +0.9
349,072 + GFF344 0.51 +0.1
349,073 - GFF344 0.51 +0.4
349,073 - GFF344 0.51 +0.2
349,099 + GFF344 0.52 -0.9
349,254 + GFF344 0.58 +0.3
349,271 + GFF344 0.58 -0.8
349,272 - GFF344 0.58 +0.3
349,293 - GFF344 0.59 +0.1
349,293 - GFF344 0.59 -0.2
349,345 + GFF344 0.61 -0.4
349,349 + GFF344 0.61 +0.6
349,379 + GFF344 0.63 +0.4
349,426 + GFF344 0.64 +1.3
349,430 + GFF344 0.64 -0.4
349,430 + GFF344 0.64 -0.2
349,431 - GFF344 0.65 -0.3
349,463 - GFF344 0.66 -0.2
349,468 + GFF344 0.66 +1.0
349,469 - GFF344 0.66 +0.2
349,469 - GFF344 0.66 -0.9
349,469 - GFF344 0.66 +0.0
349,469 - GFF344 0.66 -0.7
349,475 - GFF344 0.66 -0.5
349,475 - GFF344 0.66 +0.2
349,514 - GFF344 0.68 +0.1
349,569 - GFF344 0.70 -0.8
349,602 + GFF344 0.71 -0.1
349,602 + GFF344 0.71 +1.6
349,603 - GFF344 0.71 -0.2
349,661 + GFF344 0.73 +0.1
349,685 + GFF344 0.74 -0.3
349,685 + GFF344 0.74 -1.3
349,686 - GFF344 0.74 +0.3
349,686 - GFF344 0.74 +0.5
349,702 + GFF344 0.75 +0.3
349,702 + GFF344 0.75 +0.9
349,703 - GFF344 0.75 -0.3
349,712 + GFF344 0.75 +2.5
349,713 - GFF344 0.75 +0.6
349,756 + GFF344 0.77 -0.3
349,757 - GFF344 0.77 -0.5
349,757 - GFF344 0.77 +0.2
349,757 - GFF344 0.77 +0.2
349,843 + GFF344 0.80 +1.4
349,844 - GFF344 0.80 +0.7
349,844 - GFF344 0.80 +0.3
349,918 + GFF344 0.83 +0.7
349,918 + GFF344 0.83 -0.4
349,918 + GFF344 0.83 +0.2
349,918 + GFF344 0.83 -0.3
349,918 + GFF344 0.83 -0.1
349,918 + GFF344 0.83 +0.9
349,919 - GFF344 0.83 -0.8
349,919 - GFF344 0.83 +0.2
349,957 + GFF344 0.85 +0.5
349,958 - GFF344 0.85 -0.9
349,984 + GFF344 0.86 -0.5
349,984 + GFF344 0.86 +0.7
349,985 - GFF344 0.86 +0.5
350,050 - GFF344 0.88 +0.0
350,099 + -0.7
350,099 + +0.2
350,099 + +0.4
350,100 - -0.8
350,100 - +1.1
350,104 - +0.3
350,195 - +0.3
350,196 + +0.5
350,196 + +0.1
350,211 - -0.4
350,239 + +1.2
350,481 - -0.1
350,536 + +0.7
350,537 - +0.9
350,616 + +1.2
350,616 + +0.3
350,617 - +0.3
350,617 - +0.0
350,617 - -0.9
350,617 - +0.9
350,617 - -0.3
350,641 - -0.2
350,786 - GFF345 0.20 -0.6
350,852 + GFF345 0.30 -0.1
350,852 + GFF345 0.30 +2.4
350,853 - GFF345 0.30 -0.5
350,965 + GFF345 0.45 +0.9
350,966 - GFF345 0.45 +0.6
351,246 + GFF345 0.84 +0.9
351,246 + GFF345 0.84 -1.5
351,247 - GFF345 0.84 +1.2
351,247 - GFF345 0.84 +0.1
351,309 - +0.3
351,309 - +1.0
351,343 + -0.3
351,343 + +0.4
351,345 + +0.2
351,345 + -0.5
351,345 + -0.4
351,346 - -1.0
351,346 - +0.2

Or see this region's nucleotide sequence